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  5. PSME_00001595-RA

PSME_00001595-RA


Description : (at3g50690 : 240.0) Leucine-rich repeat (LRR) family protein; BEST Arabidopsis thaliana protein match is: U2 small nuclear ribonucleoprotein A (TAIR:AT1G09760.1); Has 87837 Blast hits to 40058 proteins in 1793 species: Archae - 912; Bacteria - 10630; Metazoa - 29004; Fungi - 15487; Plants - 5654; Viruses - 1023; Other Eukaryotes - 25127 (source: NCBI BLink). & (q6ysf3|an32_orysa : 223.0) Acidic leucine-rich nuclear phosphoprotein 32-related protein (ANP32/acidic nuclear phosphoprotein-like protein) - Oryza sativa (Rice) & (reliability: 480.0) & (original description: no original description)


Gene families : OG_42_0003892 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003892_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001595-RA
Cluster HCCA clusters: Cluster_237

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G319281 No alias Leucine-rich repeat (LRR) family protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!