1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00001834-RA

PSME_00001834-RA


Description : (at1g33250 : 408.0) Protein of unknown function (DUF604); FUNCTIONS IN: transferase activity, transferring glycosyl groups; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT4G23490.1); Has 724 Blast hits to 713 proteins in 104 species: Archae - 0; Bacteria - 0; Metazoa - 271; Fungi - 168; Plants - 272; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink). & (reliability: 816.0) & (original description: no original description)


Gene families : OG_42_0000161 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000161_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001834-RA
Cluster HCCA clusters: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
A4A49_06330 No alias hypothetical protein 0.02 Orthogroups_2024-Update
A4A49_10409 No alias hypothetical protein 0.03 Orthogroups_2024-Update
A4A49_17603 No alias hypothetical protein 0.03 Orthogroups_2024-Update
At1g33250 No alias Beta-1,3-n-acetylglucosaminyltransferase radical fringe... 0.03 Orthogroups_2024-Update
Brara.A02005.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02937.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I02705.1 No alias Unknown function 0.02 Orthogroups_2024-Update
GRMZM2G040068 No alias Protein of unknown function (DUF604) 0.04 Orthogroups_2024-Update
GRMZM2G061202 No alias Protein of unknown function (DUF604) 0.02 Orthogroups_2024-Update
GRMZM2G103785 No alias Protein of unknown function (DUF604) 0.02 Orthogroups_2024-Update
Glyma.01G229900 No alias Protein of unknown function (DUF604) 0.03 Orthogroups_2024-Update
Glyma.07G067500 No alias Protein of unknown function (DUF604) 0.03 Orthogroups_2024-Update
Glyma.09G256300 No alias Protein of unknown function (DUF604) 0.04 Orthogroups_2024-Update
Glyma.12G101600 No alias Protein of unknown function (DUF604) 0.03 Orthogroups_2024-Update
Glyma.16G178600 No alias Protein of unknown function (DUF604) 0.04 Orthogroups_2024-Update
HORVU3Hr1G093770.3 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g16334 No alias fringe-related protein, putative, expressed 0.04 Orthogroups_2024-Update
PSME_00029840-RA No alias (at1g07850 : 422.0) Protein of unknown function... 0.03 Orthogroups_2024-Update
Potri.010G199900 No alias Protein of unknown function (DUF604) 0.02 Orthogroups_2024-Update
Potri.016G101200 No alias Protein of unknown function (DUF604) 0.03 Orthogroups_2024-Update
Sobic.001G194300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G424132.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc12g056200 No alias transferring glycosyl group transferase (DUF604) (AHRD... 0.04 Orthogroups_2024-Update
Sopen08g029740 No alias Protein of unknown function, DUF604 0.02 Orthogroups_2024-Update
Sopen12g034370 No alias Protein of unknown function, DUF604 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006720 isoprenoid metabolic process IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008299 isoprenoid biosynthetic process IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR006740 DUF604 217 474
No external refs found!