Description : (q40665|tbb3_orysa : 816.0) Tubulin beta-3 chain (Beta-3 tubulin) - Oryza sativa (Rice) & (at5g62700 : 805.0) encodes tubulin beta-2/beta-3 chain; tubulin beta chain 3 (TUB3); FUNCTIONS IN: structural molecule activity, GTP binding, GTPase activity; INVOLVED IN: response to cold; LOCATED IN: tubulin complex, cell wall; EXPRESSED IN: cultured cell, seed; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 2 (TAIR:AT5G62690.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1610.0) & (original description: no original description)
Gene families : OG_42_0000212 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000212_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00001846-RA | |
Cluster | HCCA clusters: Cluster_165 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Glyma.08G014200 | No alias | beta-6 tubulin | 0.02 | Orthogroups_2024-Update | |
HORVU0Hr1G026030.2 | No alias | beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer | 0.02 | Orthogroups_2024-Update | |
HORVU1Hr1G064870.3 | No alias | beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G107100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os03g56810 | No alias | tubulin/FtsZ domain containing protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
Seita.4G265500.1 | No alias | beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer | 0.04 | Orthogroups_2024-Update | |
Sobic.010G224900.1 | No alias | beta-Tubulin component *(TUB) of alpha-beta-Tubulin heterodimer | 0.03 | Orthogroups_2024-Update | |
Solyc10g086760 | No alias | Tubulin beta chain (AHRD V3.3 *** A0A103XQ61_CYNCS) | 0.03 | Orthogroups_2024-Update | |
Sopen06g001890 | No alias | Tubulin/FtsZ family, GTPase domain | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003924 | GTPase activity | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000272 | polysaccharide catabolic process | IEP | Predicted GO |
BP | GO:0000394 | RNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
MF | GO:0004014 | adenosylmethionine decarboxylase activity | IEP | Predicted GO |
MF | GO:0004386 | helicase activity | IEP | Predicted GO |
BP | GO:0005976 | polysaccharide metabolic process | IEP | Predicted GO |
BP | GO:0006388 | tRNA splicing, via endonucleolytic cleavage and ligation | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006595 | polyamine metabolic process | IEP | Predicted GO |
BP | GO:0006596 | polyamine biosynthetic process | IEP | Predicted GO |
BP | GO:0006597 | spermine biosynthetic process | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
BP | GO:0008215 | spermine metabolic process | IEP | Predicted GO |
BP | GO:0008216 | spermidine metabolic process | IEP | Predicted GO |
BP | GO:0008295 | spermidine biosynthetic process | IEP | Predicted GO |
BP | GO:0008380 | RNA splicing | IEP | Predicted GO |
BP | GO:0009308 | amine metabolic process | IEP | Predicted GO |
BP | GO:0009309 | amine biosynthetic process | IEP | Predicted GO |
MF | GO:0016160 | amylase activity | IEP | Predicted GO |
MF | GO:0016161 | beta-amylase activity | IEP | Predicted GO |
BP | GO:0017003 | protein-heme linkage | IEP | Predicted GO |
BP | GO:0017004 | cytochrome complex assembly | IEP | Predicted GO |
BP | GO:0017006 | protein-tetrapyrrole linkage | IEP | Predicted GO |
BP | GO:0042401 | cellular biogenic amine biosynthetic process | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
BP | GO:0097164 | ammonium ion metabolic process | IEP | Predicted GO |
No external refs found! |