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  5. PSME_00001927-RA

PSME_00001927-RA


Description : (at1g17290 : 719.0) Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia; alanine aminotransferas (AlaAT1); FUNCTIONS IN: L-alanine:2-oxoglutarate aminotransferase activity, ATP binding; INVOLVED IN: response to cadmium ion, response to hypoxia, L-alanine catabolic process, by transamination; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: 1-aminocyclopropane-1-carboxylate synthase (InterPro:IPR001176), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major region, subdomain 2 (InterPro:IPR015422), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: alanine aminotransferase 2 (TAIR:AT1G72330.1); Has 28241 Blast hits to 28232 proteins in 2888 species: Archae - 752; Bacteria - 19527; Metazoa - 637; Fungi - 692; Plants - 1303; Viruses - 0; Other Eukaryotes - 5330 (source: NCBI BLink). & (p52894|ala2_horvu : 714.0) Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2) - Hordeum vulgare (Barley) & (reliability: 1438.0) & (original description: no original description)


Gene families : OG_42_0000898 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000898_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001927-RA
Cluster HCCA clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
Pp1s64_220V6 No alias alanine aminotransferase 0.02 Orthogroups_2024-Update
Sopen01g003480 No alias Aminotransferase class I and II 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0009058 biosynthetic process IEA InterProScan predictions
MF GO:0030170 pyridoxal phosphate binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR004839 Aminotransferase_I/II 112 450
No external refs found!