1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00001929-RA

PSME_00001929-RA


Description : (at2g39210 : 464.0) Major facilitator superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transmembrane transport; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nodulin-like (InterPro:IPR010658), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT2G28120.1); Has 3072 Blast hits to 2927 proteins in 685 species: Archae - 32; Bacteria - 1223; Metazoa - 36; Fungi - 288; Plants - 601; Viruses - 0; Other Eukaryotes - 892 (source: NCBI BLink). & (reliability: 928.0) & (original description: no original description)


Gene families : OG_42_0000169 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000169_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001929-RA
Cluster HCCA clusters: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
111826 No alias Nodulin-like / Major Facilitator Superfamily protein 0.02 Orthogroups_2024-Update
Glyma.06G189400 No alias Nodulin-like / Major Facilitator Superfamily protein 0.02 Orthogroups_2024-Update
Mp3g06660.1 No alias anion transporter (Fabaceae-N70) 0.02 Orthogroups_2024-Update
PSME_00001323-RA No alias (at2g39210 : 458.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
PSME_00053941-RA No alias (at2g39210 : 466.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
PSME_00053946-RA No alias (at2g39210 : 456.0) Major facilitator superfamily... 0.04 Orthogroups_2024-Update
Solyc02g068140 No alias Major facilitator superfamily protein (AHRD V3.3 *** AT3G01930.2) 0.02 Orthogroups_2024-Update
Solyc11g008180 No alias LOW QUALITY:Major facilitator superfamily protein (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g051950 No alias Nodulin-like 0.02 Orthogroups_2024-Update
Sopen10g033400 No alias Nodulin-like 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
MF GO:0016846 carbon-sulfur lyase activity IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0061608 nuclear import signal receptor activity IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
MF GO:0140104 molecular carrier activity IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
InterPro domains Description Start Stop
IPR010658 Nodulin-like 15 261
No external refs found!