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  5. PSME_00001974-RA

PSME_00001974-RA


Description : (q9swf9|zfnl_pea : 135.0) Zinc finger CCCH domain-containing protein ZFN-like - Pisum sativum (Garden pea) & (at3g02830 : 113.0) Encodes a zinc finger protein.; zinc finger protein 1 (ZFN1); CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: zinc finger nuclease 3 (TAIR:AT5G16540.1); Has 1325 Blast hits to 706 proteins in 142 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 147; Plants - 868; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink). & (reliability: 226.0) & (original description: no original description)


Gene families : OG_42_0000464 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000464_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00001974-RA
Cluster HCCA clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
A4A49_10593 No alias zinc finger ccch domain-containing protein zfn-like protein 0.03 Orthogroups_2024-Update
A4A49_38644 No alias zinc finger ccch domain-containing protein 67 0.03 Orthogroups_2024-Update
Brara.C03010.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Brara.J01714.1 No alias regulatory protein of RNA homeostasis 0.02 Orthogroups_2024-Update
GRMZM2G087032 No alias zinc finger protein 1 0.03 Orthogroups_2024-Update
GRMZM2G107491 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
HORVU3Hr1G035750.1 No alias regulatory protein of RNA homeostasis 0.03 Orthogroups_2024-Update
Potri.019G053200 No alias zinc finger protein 1 0.02 Orthogroups_2024-Update
Sopen09g029520 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.03 Orthogroups_2024-Update
Sopen11g004680 No alias Zinc finger C-x8-C-x5-C-x3-H type (and similar) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000571 Znf_CCCH 9 28
IPR000571 Znf_CCCH 335 351
No external refs found!