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  5. PSME_00002174-RA

PSME_00002174-RA


Description : (at3g14270 : 498.0) Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization.; FORMS APLOID AND BINUCLEATE CELLS 1B (FAB1B); CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Zinc finger, FYVE-type (InterPro:IPR000306), Zinc finger, FYVE-related (InterPro:IPR017455), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana protein match is: 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (TAIR:AT4G33240.2); Has 8765 Blast hits to 8134 proteins in 458 species: Archae - 587; Bacteria - 13; Metazoa - 3836; Fungi - 1744; Plants - 978; Viruses - 3; Other Eukaryotes - 1604 (source: NCBI BLink). & (reliability: 996.0) & (original description: no original description)


Gene families : OG_42_0000617 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000617_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002174-RA
Cluster HCCA clusters: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
Bradi2g56547 No alias 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion... 0.04 Orthogroups_2024-Update
Bradi3g36397 No alias FORMS APLOID AND BINUCLEATE CELLS 1C 0.03 Orthogroups_2024-Update
PSME_00002173-RA No alias (at4g33240 : 555.0) Encodes a protein that is predicted... 0.03 Orthogroups_2024-Update
Seita.4G162500.1 No alias EC_2.7 transferase transferring phosphorus-containing... 0.05 Orthogroups_2024-Update
Solyc05g008200 No alias 1-phosphatidylinositol-3-phosphate 5-kinase (AHRD V3.3... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002423 Cpn60/TCP-1 412 613
IPR000306 Znf_FYVE 33 100
No external refs found!