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  5. PSME_00002183-RA

PSME_00002183-RA


Description : (at4g02750 : 512.0) Tetratricopeptide repeat (TPR)-like superfamily protein; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G09410.1); Has 56089 Blast hits to 14902 proteins in 275 species: Archae - 0; Bacteria - 15; Metazoa - 173; Fungi - 123; Plants - 55165; Viruses - 0; Other Eukaryotes - 613 (source: NCBI BLink). & (q76c99|rf1_orysa : 106.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1024.0) & (original description: no original description)


Gene families : OG_42_0002876 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002876_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002183-RA
Cluster HCCA clusters: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
77736 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 279 325
IPR002885 Pentatricopeptide_repeat 116 163
IPR032867 DYW_dom 534 658
IPR002885 Pentatricopeptide_repeat 383 411
IPR002885 Pentatricopeptide_repeat 191 213
IPR002885 Pentatricopeptide_repeat 354 377
IPR002885 Pentatricopeptide_repeat 219 248
IPR002885 Pentatricopeptide_repeat 435 459
IPR002885 Pentatricopeptide_repeat 504 530
No external refs found!