1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen05g018490

Sopen05g018490


Description : Reverse transcriptase (RNA-dependent DNA polymerase)


Gene families : OG_42_0000004 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen05g018490
Cluster HCCA clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Cre08.g358542 No alias Function unknown 0.02 Orthogroups_2024-Update
Kfl00821_g9 kfl00821_g9_v1.1 no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
LOC_Os01g45290 No alias retrotransposon protein, putative, unclassified, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g24400 No alias retrotransposon protein, putative, unclassified, expressed 0.02 Orthogroups_2024-Update
Mp8g07960.1 No alias no hits & (original description: none) 0.02 Orthogroups_2024-Update
Solyc08g044450 No alias No description available 0.02 Orthogroups_2024-Update
Solyc10g054430 No alias No description available 0.03 Orthogroups_2024-Update
Sopen00g001810 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen00g005290 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g010380 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen01g013800 No alias Chromo (CHRromatin Organisation MOdifier) domain 0.04 Orthogroups_2024-Update
Sopen01g026660 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen04g020280 No alias Integrase core domain 0.03 Orthogroups_2024-Update
Sopen05g023460 No alias Integrase core domain 0.02 Orthogroups_2024-Update
Sopen06g012360 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.03 Orthogroups_2024-Update
Sopen08g020120 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.04 Orthogroups_2024-Update
Sopen09g012210 No alias Reverse transcriptase (RNA-dependent DNA polymerase) 0.02 Orthogroups_2024-Update
Sopen10g008640 No alias Retrotransposon gag protein 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000477 RT_dom 719 879
IPR001584 Integrase_cat-core 1259 1370
IPR005162 Retrotrans_gag_dom 162 258
No external refs found!