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  5. PSME_00002208-RA

PSME_00002208-RA


Description : (at1g55020 : 779.0) lipoxygenase, a defense gene conferring resistance Xanthomonas campestris; lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink). & (p37831|lox1_soltu : 766.0) Lipoxygenase 1 (EC 1.13.11.12) - Solanum tuberosum (Potato) & (reliability: 1558.0) & (original description: no original description)


Gene families : OG_42_0000116 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000116_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002208-RA
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
Bradi1g11680 No alias lipoxygenase 1 0.03 Orthogroups_2024-Update
Bradi3g07010 No alias lipoxygenase 2 0.02 Orthogroups_2024-Update
Bradi3g39980 No alias lipoxygenase 2 0.04 Orthogroups_2024-Update
Brara.B01571.1 No alias 13-lipoxygenase *(LOX) & EC_1.13 oxidoreductase acting... 0.04 Orthogroups_2024-Update
Brara.G02542.1 No alias 13-lipoxygenase *(LOX) & EC_1.13 oxidoreductase acting... 0.03 Orthogroups_2024-Update
GRMZM2G109130 No alias lipoxygenase 1 0.03 Orthogroups_2024-Update
Glyma.04G105500 No alias lipoxygenase 1 0.03 Orthogroups_2024-Update
Glyma.07G039900 No alias lipoxygenase 3 0.04 Orthogroups_2024-Update
Glyma.13G030300 No alias lipoxygenase 2 0.03 Orthogroups_2024-Update
HORVU4Hr1G076570.6 No alias 13-lipoxygenase *(LOX) & EC_1.13 oxidoreductase acting... 0.02 Orthogroups_2024-Update
HORVU6Hr1G000510.1 No alias 13-lipoxygenase *(LOX) & EC_1.13 oxidoreductase acting... 0.03 Orthogroups_2024-Update
LOC_Os02g10120 No alias lipoxygenase, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g04420 No alias lipoxygenase 4, putative 0.02 Orthogroups_2024-Update
MA_10427506g0010 No alias (at1g55020 : 939.0) lipoxygenase, a defense gene... 0.03 Orthogroups_2024-Update
MA_10427506g0020 No alias (p37831|lox1_soltu : 854.0) Lipoxygenase 1 (EC... 0.04 Orthogroups_2024-Update
MA_10429541g0010 No alias (at1g72520 : 993.0) PLAT/LH2 domain-containing... 0.05 Orthogroups_2024-Update
MA_10430462g0010 No alias (at3g22400 : 148.0) LOX5; FUNCTIONS IN: oxidoreductase... 0.04 Orthogroups_2024-Update
MA_10436100g0010 No alias (p37831|lox1_soltu : 887.0) Lipoxygenase 1 (EC... 0.04 Orthogroups_2024-Update
MA_123947g0010 No alias (at3g22400 : 376.0) LOX5; FUNCTIONS IN: oxidoreductase... 0.03 Orthogroups_2024-Update
MA_184054g0010 No alias (p37831|lox1_soltu : 807.0) Lipoxygenase 1 (EC... 0.03 Orthogroups_2024-Update
Mp2g16000.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.13... 0.02 Orthogroups_2024-Update
Mp2g23380.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.13... 0.02 Orthogroups_2024-Update
Mp8g12930.1 No alias Enzyme classification.EC_1 oxidoreductases.EC_1.13... 0.02 Orthogroups_2024-Update
PSME_00002206-RA No alias (p37831|lox1_soltu : 871.0) Lipoxygenase 1 (EC... 0.08 Orthogroups_2024-Update
PSME_00005109-RA No alias (p37831|lox1_soltu : 802.0) Lipoxygenase 1 (EC... 0.05 Orthogroups_2024-Update
PSME_00006847-RA No alias (at1g55020 : 964.0) lipoxygenase, a defense gene... 0.05 Orthogroups_2024-Update
PSME_00017953-RA No alias (p37831|lox1_soltu : 1048.0) Lipoxygenase 1 (EC... 0.05 Orthogroups_2024-Update
PSME_00024452-RA No alias (p37831|lox1_soltu : 840.0) Lipoxygenase 1 (EC... 0.05 Orthogroups_2024-Update
PSME_00027050-RA No alias (p37831|lox1_soltu : 810.0) Lipoxygenase 1 (EC... 0.05 Orthogroups_2024-Update
PSME_00029376-RA No alias (at1g72520 : 1009.0) PLAT/LH2 domain-containing... 0.04 Orthogroups_2024-Update
PSME_00038260-RA No alias (p24095|loxx_soybn : 544.0) Seed lipoxygenase (EC... 0.06 Orthogroups_2024-Update
Pp1s434_27V6 No alias af361893_1bacterial-induced lipoxygenase 0.02 Orthogroups_2024-Update
Pp1s70_182V6 No alias lipoxygenase 0.03 Orthogroups_2024-Update
Seita.6G205300.1 No alias 13-lipoxygenase *(LOX) & EC_1.13 oxidoreductase acting... 0.06 Orthogroups_2024-Update
Seita.9G127700.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.06 Orthogroups_2024-Update
Sobic.001G125700.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Sobic.001G125800.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.06 Orthogroups_2024-Update
Sobic.001G483400.1 No alias 13-lipoxygenase *(LOX) & EC_1.13 oxidoreductase acting... 0.03 Orthogroups_2024-Update
Sobic.006G248300.1 No alias EC_1.13 oxidoreductase acting on single donor with... 0.02 Orthogroups_2024-Update
Solyc01g006540 No alias lipoxygenase C 0.02 Orthogroups_2024-Update
Solyc01g099210 No alias Lipoxygenase (AHRD V3.3 *** A8W7J7_CAMSI) 0.04 Orthogroups_2024-Update
Solyc08g029000 No alias Lipoxygenase (AHRD V3.3 *** Q43800_TOBAC) 0.04 Orthogroups_2024-Update
Sopen00g007380 No alias Lipoxygenase 0.03 Orthogroups_2024-Update
Sopen09g030680 No alias Lipoxygenase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
BP GO:0055114 oxidation-reduction process IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004568 chitinase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006022 aminoglycan metabolic process IEP Predicted GO
BP GO:0006026 aminoglycan catabolic process IEP Predicted GO
BP GO:0006030 chitin metabolic process IEP Predicted GO
BP GO:0006032 chitin catabolic process IEP Predicted GO
BP GO:0006040 amino sugar metabolic process IEP Predicted GO
MF GO:0008324 cation transmembrane transporter activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Predicted GO
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Predicted GO
BP GO:0016998 cell wall macromolecule catabolic process IEP Predicted GO
BP GO:0017144 drug metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
BP GO:0042737 drug catabolic process IEP Predicted GO
BP GO:0044036 cell wall macromolecule metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0046348 amino sugar catabolic process IEP Predicted GO
BP GO:1901071 glucosamine-containing compound metabolic process IEP Predicted GO
BP GO:1901072 glucosamine-containing compound catabolic process IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901136 carbohydrate derivative catabolic process IEP Predicted GO
BP GO:1901565 organonitrogen compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR013819 LipOase_C 163 643
IPR013819 LipOase_C 643 709
IPR001024 PLAT/LH2_dom 59 149
No external refs found!