PSME_00002220-RA

Description : (q5z9s8|pdr12_orysa : 1203.0) Pleiotropic drug resistance protein 12 - Oryza sativa (Rice) & (at1g59870 : 1187.0) ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acidÃ±dependent manner. Required for mlo resistance. Has Cd transporter activity (Cd2+ extrusion pump) and contributes to heavy metal resistance.; PENETRATION 3 (PEN3); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, cadmium ion transmembrane transporter activity; INVOLVED IN: in 9 processes; LOCATED IN: mitochondrion, plasma membrane, chloroplast, membrane, chloroplast envelope; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 392230 Blast hits to 282257 proteins in 3986 species: Archae - 7583; Bacteria - 315608; Metazoa - 9692; Fungi - 7346; Plants - 6702; Viruses - 4; Other Eukaryotes - 45295 (source: NCBI BLink). & (reliability: 2374.0) & (original description: no original description)

Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00002220-RA
Cluster	HCCA clusters: Cluster_283

Target	Alias	Description	ECC score	Gene Family Method
441722	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
A4A49_09052	No alias	pleiotropic drug resistance protein 1	0.03	Orthogroups_2024-Update
A4A49_31699	No alias	pleiotropic drug resistance protein 2	0.02	Orthogroups_2024-Update
Bradi2g43120	No alias	pleiotropic drug resistance 12	0.02	Orthogroups_2024-Update
Brara.C01827.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Brara.F01068.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Brara.G01592.1	No alias	subfamily ABCG transporter	0.03	Orthogroups_2024-Update
Glyma.18G063400	No alias	pleiotropic drug resistance 3	0.03	Orthogroups_2024-Update
Kfl00010_0550	kfl00010_0550_v1.1	(q76cu2\|pdr1_tobac : 717.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
Kfl00361_0030	kfl00361_0030_v1.1	(q5z9s8\|pdr12_orysa : 1282.0) Pleiotropic drug...	0.02	Orthogroups_2024-Update
LOC_Os01g08260	No alias	pleiotropic drug resistance protein 4, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os01g42380	No alias	pleiotropic drug resistance protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_10427683g0010	No alias	(at1g59870 : 1105.0) ATP binding cassette transporter....	0.03	Orthogroups_2024-Update
PSME_00001267-RA	No alias	(q5z9s8\|pdr12_orysa : 1556.0) Pleiotropic drug...	0.03	Orthogroups_2024-Update
PSME_00005403-RA	No alias	(q8gu88\|pdr7_orysa : 1833.0) Putative pleiotropic drug...	0.04	Orthogroups_2024-Update
PSME_00007073-RA	No alias	(q8gu88\|pdr7_orysa : 1875.0) Putative pleiotropic drug...	0.02	Orthogroups_2024-Update
PSME_00007342-RA	No alias	(q5z9s8\|pdr12_orysa : 477.0) Pleiotropic drug resistance...	0.02	Orthogroups_2024-Update
PSME_00014724-RA	No alias	(q76cu2\|pdr1_tobac : 1860.0) Pleiotropic drug resistance...	0.04	Orthogroups_2024-Update
Potri.010G153700	No alias	pleiotropic drug resistance 9	0.03	Orthogroups_2024-Update
Potri.018G074500	No alias	pleiotropic drug resistance 4	0.03	Orthogroups_2024-Update
Pp1s59_42V6	No alias	atp-binding cassette	0.03	Orthogroups_2024-Update
Sobic.010G196900.1	No alias	subfamily ABCG transporter	0.02	Orthogroups_2024-Update
Solyc06g076930	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.02	Orthogroups_2024-Update
Solyc12g100190	No alias	Pleiotropic drug resistance ABC transporter (AHRD V3.3...	0.02	Orthogroups_2024-Update
Sopen11g026710	No alias	ABC-2 type transporter	0.02	Orthogroups_2024-Update
Sopen12g034810	No alias	ABC-2 type transporter	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008144	drug binding	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	InterProScan predictions
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Predicted GO
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004057	arginyltransferase activity	IEP	Predicted GO
MF	GO:0004673	protein histidine kinase activity	IEP	Predicted GO
BP	GO:0006020	inositol metabolic process	IEP	Predicted GO
BP	GO:0006066	alcohol metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006721	terpenoid metabolic process	IEP	Predicted GO
MF	GO:0008661	1-deoxy-D-xylulose-5-phosphate synthase activity	IEP	Predicted GO
BP	GO:0016114	terpenoid biosynthetic process	IEP	Predicted GO
BP	GO:0016598	protein arginylation	IEP	Predicted GO
MF	GO:0016701	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	IEP	Predicted GO
MF	GO:0016744	transferase activity, transferring aldehyde or ketonic groups	IEP	Predicted GO
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Predicted GO
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Predicted GO
MF	GO:0016779	nucleotidyltransferase activity	IEP	Predicted GO
MF	GO:0016831	carboxy-lyase activity	IEP	Predicted GO
BP	GO:0019310	inositol catabolic process	IEP	Predicted GO
BP	GO:0019751	polyol metabolic process	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Predicted GO
BP	GO:0044275	cellular carbohydrate catabolic process	IEP	Predicted GO
BP	GO:0046164	alcohol catabolic process	IEP	Predicted GO
BP	GO:0046174	polyol catabolic process	IEP	Predicted GO
MF	GO:0050113	inositol oxygenase activity	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0097747	RNA polymerase activity	IEP	Predicted GO
BP	GO:1901616	organic hydroxy compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	39	181
IPR013525	ABC_2_trans	322	532
IPR013581	PDR_assoc	538	607
IPR003439	ABC_transporter-like	719	859

External Links

No external refs found!

PSME_00002220-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation