1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00002348-RA

PSME_00002348-RA


Description : (at3g03580 : 588.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). & (q76c99|rf1_orysa : 138.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1176.0) & (original description: no original description)


Gene families : OG_42_0022324 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002348-RA
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
MA_33151g0010 No alias (at3g03580 : 584.0) Tetratricopeptide repeat (TPR)-like... 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 661 684
IPR002885 Pentatricopeptide_repeat 727 755
IPR002885 Pentatricopeptide_repeat 182 229
IPR002885 Pentatricopeptide_repeat 486 531
IPR002885 Pentatricopeptide_repeat 80 128
IPR002885 Pentatricopeptide_repeat 282 326
IPR002885 Pentatricopeptide_repeat 384 431
IPR002885 Pentatricopeptide_repeat 586 633
IPR032867 DYW_dom 759 824
No external refs found!