Description : (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). & (q76c99|rf1_orysa : 144.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1392.0) & (original description: no original description)
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Pseudotsuga release: PSME_00002375-RA | |
Cluster | HCCA clusters: Cluster_242 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
105356 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
51483 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
A4A49_21718 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
A4A49_30034 | No alias | pentatricopeptide repeat-containing protein, chloroplastic | 0.03 | Orthogroups_2024-Update | |
At1g25360 | No alias | Pentatricopeptide repeat-containing protein At1g25360... | 0.03 | Orthogroups_2024-Update | |
At2g04860 | No alias | Pentatricopeptide repeat-containing protein At2g04860... | 0.04 | Orthogroups_2024-Update | |
At3g14730 | No alias | Pentatricopeptide repeat-containing protein At3g14730... | 0.03 | Orthogroups_2024-Update | |
At5g03800 | No alias | Glycosyltransferase (Fragment)... | 0.03 | Orthogroups_2024-Update | |
Bradi1g20230 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g37360 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Bradi4g30190 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | Orthogroups_2024-Update | |
Brara.E02827.1 | No alias | RNA editing factor *(MEF22) | 0.03 | Orthogroups_2024-Update | |
GRMZM2G320723 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.01G048100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.05G078900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G073600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.20G154600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
HORVU3Hr1G023070.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G023090.1 | No alias | RNA editing factor *(OTP81) | 0.02 | Orthogroups_2024-Update | |
HORVU4Hr1G014730.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G114390.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
LOC_Os01g08120 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os01g46230 | No alias | tetratricopeptide-like helical, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os03g64370 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os06g02200 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os08g33700 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os10g30760 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
LOC_Os10g34720 | No alias | LOI1, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_122546g0010 | No alias | (at3g13770 : 499.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_43727g0010 | No alias | (at3g02010 : 679.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_767209g0010 | No alias | (at3g49170 : 650.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
MA_87646g0010 | No alias | (at3g02330 : 723.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_9989604g0010 | No alias | (at4g18750 : 575.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00013280-RA | No alias | (at4g33170 : 410.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00043165-RA | No alias | (at3g13770 : 384.0) Pentatricopeptide repeat (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00048724-RA | No alias | (at3g49170 : 353.0) embryo defective 2261 (EMB2261);... | 0.03 | Orthogroups_2024-Update | |
Potri.016G053500 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
Seita.2G031700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.4G100100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.4G216600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.008G147400.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc04g016540 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen03g026730 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen03g033730 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g038830 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen09g001850 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0003937 | IMP cyclohydrolase activity | IEP | Predicted GO |
MF | GO:0004556 | alpha-amylase activity | IEP | Predicted GO |
MF | GO:0004643 | phosphoribosylaminoimidazolecarboxamide formyltransferase activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006629 | lipid metabolic process | IEP | Predicted GO |
BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006650 | glycerophospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
BP | GO:0008152 | metabolic process | IEP | Predicted GO |
BP | GO:0009117 | nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
MF | GO:0016740 | transferase activity | IEP | Predicted GO |
MF | GO:0016742 | hydroxymethyl-, formyl- and related transferase activity | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Predicted GO |
MF | GO:0016843 | amine-lyase activity | IEP | Predicted GO |
MF | GO:0016844 | strictosidine synthase activity | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
MF | GO:0019238 | cyclohydrolase activity | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
BP | GO:0046486 | glycerolipid metabolic process | IEP | Predicted GO |
BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 177 | 200 |
IPR002885 | Pentatricopeptide_repeat | 10 | 30 |
IPR002885 | Pentatricopeptide_repeat | 412 | 438 |
IPR002885 | Pentatricopeptide_repeat | 683 | 707 |
IPR002885 | Pentatricopeptide_repeat | 381 | 407 |
IPR032867 | DYW_dom | 782 | 906 |
IPR002885 | Pentatricopeptide_repeat | 507 | 554 |
IPR002885 | Pentatricopeptide_repeat | 204 | 248 |
IPR002885 | Pentatricopeptide_repeat | 305 | 351 |
IPR002885 | Pentatricopeptide_repeat | 608 | 656 |
IPR002885 | Pentatricopeptide_repeat | 101 | 149 |
No external refs found! |