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  5. PSME_00002432-RA

PSME_00002432-RA


Description : (at3g03060 : 816.0) P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: ATPase activity, zinc ion binding; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Protein of unknown function DUF3523 (InterPro:IPR021911); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT5G16930.1); Has 38046 Blast hits to 31515 proteins in 3061 species: Archae - 1414; Bacteria - 11706; Metazoa - 8052; Fungi - 4459; Plants - 2737; Viruses - 110; Other Eukaryotes - 9568 (source: NCBI BLink). & (p46465|prs6a_orysa : 83.2) 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) - Oryza sativa (Rice) & (reliability: 1612.0) & (original description: no original description)


Gene families : OG_42_0001970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002432-RA
Cluster HCCA clusters: Cluster_222

Target Alias Description ECC score Gene Family Method Actions
Pp1s106_174V6 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004334 fumarylacetoacetase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016822 hydrolase activity, acting on acid carbon-carbon bonds IEP Predicted GO
MF GO:0016823 hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances IEP Predicted GO
CC GO:0030014 CCR4-NOT complex IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 420 546
IPR021911 DUF3523 51 269
IPR021911 DUF3523 297 348
No external refs found!