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  5. PSME_00002450-RA

PSME_00002450-RA


Description : (at3g13224 : 266.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G40490.1); Has 77800 Blast hits to 37058 proteins in 1622 species: Archae - 33; Bacteria - 18580; Metazoa - 32661; Fungi - 6344; Plants - 11400; Viruses - 392; Other Eukaryotes - 8390 (source: NCBI BLink). & (p19682|roc3_nicsy : 103.0) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP) - Nicotiana sylvestris (Wood tobacco) & (reliability: 532.0) & (original description: no original description)


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002450-RA

Target Alias Description ECC score Gene Family Method Actions
101375 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
A4A49_17195 No alias heterogeneous nuclear ribonucleoprotein 1 0.05 Orthogroups_2024-Update
HORVU7Hr1G060930.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Kfl00222_0020 kfl00222_0020_v1.1 (at1g17640 : 196.0) RNA-binding (RRM/RBD/RNP motifs)... 0.01 Orthogroups_2024-Update
LOC_Os02g12850 No alias RNA recognition motif containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os11g41890 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 151 219
IPR000504 RRM_dom 64 131
No external refs found!