1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00002464-RA

PSME_00002464-RA


Description : (at3g11410 : 275.0) Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA.; protein phosphatase 2CA (PP2CA); FUNCTIONS IN: protein binding, protein serine/threonine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: in 6 processes; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: highly ABA-induced PP2C gene 2 (TAIR:AT1G07430.1); Has 6894 Blast hits to 6854 proteins in 510 species: Archae - 4; Bacteria - 413; Metazoa - 1689; Fungi - 773; Plants - 2747; Viruses - 7; Other Eukaryotes - 1261 (source: NCBI BLink). & (reliability: 524.0) & (original description: no original description)


Gene families : OG_42_0000303 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000303_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002464-RA
Cluster HCCA clusters: Cluster_108

Target Alias Description ECC score Gene Family Method Actions
At5g51760 No alias Probable protein phosphatase 2C 75... 0.03 Orthogroups_2024-Update
Bradi2g54810 No alias highly ABA-induced PP2C gene 3 0.03 Orthogroups_2024-Update
Glyma.13G106800 No alias homology to ABI1 0.03 Orthogroups_2024-Update
HORVU4Hr1G060370.1 No alias clade A phosphatase 0.03 Orthogroups_2024-Update
LOC_Os05g46040 No alias protein phosphatase 2C, putative, expressed 0.03 Orthogroups_2024-Update
MA_444738g0020 No alias (at2g29380 : 278.0) highly ABA-induced PP2C gene 3... 0.03 Orthogroups_2024-Update
Seita.3G121900.1 No alias regulatory phosphatase component *(ABI1/ABI2) of... 0.03 Orthogroups_2024-Update
Seita.3G218800.1 No alias clade A phosphatase 0.05 Orthogroups_2024-Update
Sobic.009G238600.1 No alias clade A phosphatase 0.04 Orthogroups_2024-Update
Solyc03g006960 No alias Protein phosphatase 2C family protein (AHRD V3.3 *** AT5G51760.1) 0.04 Orthogroups_2024-Update
Solyc06g051940 No alias Protein phosphatase 2c, putative (AHRD V3.3 *** B9RIK1_RICCO) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
MF GO:0004379 glycylpeptide N-tetradecanoyltransferase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
MF GO:0016410 N-acyltransferase activity IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
MF GO:0019107 myristoyltransferase activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0030246 carbohydrate binding IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR001932 PPM-type_phosphatase_dom 155 450
No external refs found!