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  5. PSME_00002545-RA

PSME_00002545-RA


Description : (at5g16780 : 88.2) Encodes a protein belonging to SART-1 family. The gene is expressed in the basal region of the developing embryo during heart stage. Phenotypic analyses of dot2 mutants suggest that this protein plays a role in root, shoot, and flower development. dot2 mutants are dwarved plants that display an aberrant spurred leaf venation pattern and fail to flower. In the roots DOT2 appears to be require for normal meristem organization and maintenance and the proper expression of PIN and PLT genes.; DEFECTIVELY ORGANIZED TRIBUTARIES 2 (DOT2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 31 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SART-1 protein (InterPro:IPR005011); BEST Arabidopsis thaliana protein match is: SART-1 family (TAIR:AT3G14700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 176.4) & (original description: no original description)


Gene families : OG_42_0002097 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002545-RA
Cluster HCCA clusters: Cluster_388

Target Alias Description ECC score Gene Family Method Actions
412138 No alias SART-1 family 0.02 Orthogroups_2024-Update
At3g14700 No alias At3g14700 [Source:UniProtKB/TrEMBL;Acc:Q84VW3] 0.03 Orthogroups_2024-Update
PSME_00007170-RA No alias (at5g16780 : 222.0) Encodes a protein belonging to... 0.05 Orthogroups_2024-Update
PSME_00013239-RA No alias (at5g16780 : 81.6) Encodes a protein belonging to SART-1... 0.04 Orthogroups_2024-Update
PSME_00055565-RA No alias (at5g16780 : 132.0) Encodes a protein belonging to... 0.04 Orthogroups_2024-Update
Solyc11g008470 No alias U4/U6.U5 tri-snRNP-associated protein 1 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!