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  5. PSME_00002580-RA

PSME_00002580-RA


Description : (at3g07810 : 236.0) RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G47620.2); Has 54120 Blast hits to 30425 proteins in 1467 species: Archae - 38; Bacteria - 13586; Metazoa - 19029; Fungi - 4969; Plants - 7799; Viruses - 151; Other Eukaryotes - 8548 (source: NCBI BLink). & (reliability: 472.0) & (original description: no original description)


Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002580-RA
Cluster HCCA clusters: Cluster_402

Target Alias Description ECC score Gene Family Method Actions
A4A49_26878 No alias rna-binding protein 1 0.01 Orthogroups_2024-Update
At1g17640 No alias RNA-binding (RRM/RBD/RNP motifs) family protein... 0.02 Orthogroups_2024-Update
At4g26650 No alias AT4g26650/T15N24_100 [Source:UniProtKB/TrEMBL;Acc:Q8W569] 0.01 Orthogroups_2024-Update
Brara.I01670.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.I01999.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Glyma.19G003900 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.05 Orthogroups_2024-Update
LOC_Os01g56110 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g56020 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os08g38410 No alias RNA recognition motif containing protein, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os10g33230 No alias RNA recognition motif containing protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00023415-RA No alias (at5g40490 : 216.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
PSME_00045317-RA No alias (at3g13224 : 253.0) RNA-binding (RRM/RBD/RNP motifs)... 0.02 Orthogroups_2024-Update
PSME_00048649-RA No alias (at3g07810 : 303.0) RNA-binding (RRM/RBD/RNP motifs)... 0.01 Orthogroups_2024-Update
Potri.002G115000 No alias RNA-binding protein 1 0.01 Orthogroups_2024-Update
Potri.002G222400 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Orthogroups_2024-Update
Potri.017G064901 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Solyc06g062740 No alias RNA-binding (RRM/RBD/RNP motifs) family protein (AHRD... 0.01 Orthogroups_2024-Update
Solyc12g006180 No alias RNA-binding protein, putative (AHRD V3.3 *** Q1ENZ5_MUSAC) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 66
IPR000504 RRM_dom 106 171
No external refs found!