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- Pseudotsuga menziesii
- Sequence
- PSME_00002658-RA
PSME_00002658-RA
Description : (p35100|clpc_pea : 520.0) ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplast precursor - Pisum sativum (Garden pea) & (at5g50920 : 509.0) Encodes a protein that is similar to ATP-dependent Clp protease ATP-binding subunit / ClpC. Involved in protein import into the chloroplast. May provide ATP source that drives the TIC (Translocon at the Inner envelope membrane of Chloroplasts) translocation machinery.; CLPC homologue 1 (CLPC1); FUNCTIONS IN: ATP-dependent peptidase activity, ATPase activity, ATP binding; INVOLVED IN: protein import into chloroplast stroma, regulation of chlorophyll biosynthetic process, protein targeting to chloroplast, chloroplast organization; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA+ type, core (InterPro:IPR003593), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), UvrB/UvrC protein (InterPro:IPR001943), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: Clp ATPase (TAIR:AT3G48870.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 1018.0) & (original description: no original description)
Expression Profile
Attention: This gene has low abundance.
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type | Description | Actions |
Neighborhood | Pseudotsuga release: PSME_00002658-RA | |
Cluster | HCCA clusters: Cluster_136 | |
Functional Annotation
Type | GO Term | Name | Evidence | Source |
MF | GO:0000166 | nucleotide binding | None | Extended |
MF | GO:0003674 | molecular_function | None | Extended |
MF | GO:0005488 | binding | None | Extended |
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
MF | GO:0008144 | drug binding | None | Extended |
MF | GO:0017076 | purine nucleotide binding | None | Extended |
MF | GO:0030554 | adenyl nucleotide binding | None | Extended |
MF | GO:0032553 | ribonucleotide binding | None | Extended |
MF | GO:0032555 | purine ribonucleotide binding | None | Extended |
MF | GO:0032559 | adenyl ribonucleotide binding | None | Extended |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | None | Extended |
MF | GO:0036094 | small molecule binding | None | Extended |
MF | GO:0043167 | ion binding | None | Extended |
MF | GO:0043168 | anion binding | None | Extended |
MF | GO:0097159 | organic cyclic compound binding | None | Extended |
MF | GO:0097367 | carbohydrate derivative binding | None | Extended |
MF | GO:1901265 | nucleoside phosphate binding | None | Extended |
MF | GO:1901363 | heterocyclic compound binding | None | Extended |
Type | GO Term | Name | Evidence | Source |
MF | GO:0003839 | gamma-glutamylcyclotransferase activity | IEP | Predicted GO |
MF | GO:0005215 | transporter activity | IEP | Predicted GO |
BP | GO:0006575 | cellular modified amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006749 | glutathione metabolic process | IEP | Predicted GO |
BP | GO:0006751 | glutathione catabolic process | IEP | Predicted GO |
BP | GO:0006790 | sulfur compound metabolic process | IEP | Predicted GO |
CC | GO:0016020 | membrane | IEP | Predicted GO |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Predicted GO |
MF | GO:0016842 | amidine-lyase activity | IEP | Predicted GO |
MF | GO:0022857 | transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0042219 | cellular modified amino acid catabolic process | IEP | Predicted GO |
BP | GO:0043171 | peptide catabolic process | IEP | Predicted GO |
BP | GO:0044273 | sulfur compound catabolic process | IEP | Predicted GO |
BP | GO:0051187 | cofactor catabolic process | IEP | Predicted GO |
BP | GO:0055085 | transmembrane transport | IEP | Predicted GO |