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  5. PSME_00002717-RA

PSME_00002717-RA


Description : (at1g49850 : 98.6) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT2G15580.1); Has 9155 Blast hits to 9129 proteins in 266 species: Archae - 0; Bacteria - 4; Metazoa - 2526; Fungi - 625; Plants - 4723; Viruses - 8; Other Eukaryotes - 1269 (source: NCBI BLink). & (reliability: 197.2) & (original description: no original description)


Gene families : OG_42_0008179 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008179_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002717-RA
Cluster HCCA clusters: Cluster_140

Target Alias Description ECC score Gene Family Method Actions
MA_10426524g0010 No alias (at1g49850 : 95.5) RING/U-box superfamily protein;... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
BP GO:0006904 vesicle docking involved in exocytosis IEP Predicted GO
BP GO:0022406 membrane docking IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0048278 vesicle docking IEP Predicted GO
BP GO:0051640 organelle localization IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:0140029 exocytic process IEP Predicted GO
BP GO:0140056 organelle localization by membrane tethering IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 217 259
No external refs found!