1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00002824-RA

PSME_00002824-RA


Description : (at3g18990 : 90.5) Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3; REDUCED VERNALIZATION RESPONSE 1 (VRN1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: related to vernalization1 1 (TAIR:AT1G49480.1); Has 683 Blast hits to 597 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 682; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). & (reliability: 181.0) & (original description: no original description)


Gene families : OG_42_0000768 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000768_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002824-RA

Target Alias Description ECC score Gene Family Method Actions
Potri.004G147200 No alias AP2/B3-like transcriptional factor family protein 0.02 Orthogroups_2024-Update
Potri.009G108500 No alias AP2/B3-like transcriptional factor family protein 0.01 Orthogroups_2024-Update
Solyc07g054630 No alias B3 domain-containing transcription factor VRN1 (AHRD... 0.02 Orthogroups_2024-Update
Sopen01g017870 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen07g028530 No alias B3 DNA binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0007165 signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 98 175
IPR003340 B3_DNA-bd 393 484
No external refs found!