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  5. PSME_00002892-RA

PSME_00002892-RA


Description : (at5g01400 : 185.0) Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64.; ENHANCED SILENCING PHENOTYPE 4 (ESP4); FUNCTIONS IN: binding; INVOLVED IN: posttranscriptional gene silencing by RNA, RNA processing; LOCATED IN: mRNA cleavage and polyadenylation specificity factor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075), Armadillo-type fold (InterPro:IPR016024), Protein of unknown function DUF3453 (InterPro:IPR021850); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G27595.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 370.0) & (original description: no original description)


Gene families : OG_42_0002144 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002144_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00002892-RA
Cluster HCCA clusters: Cluster_105

Target Alias Description ECC score Gene Family Method Actions
Bradi3g00320 No alias HEAT repeat-containing protein 0.03 Orthogroups_2024-Update
Brara.B00024.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 Orthogroups_2024-Update
Glyma.04G089400 No alias Function unknown 0.02 Orthogroups_2024-Update
Kfl00176_0180 kfl00176_0180_v1.1 (at1g27595 : 384.0) CONTAINS InterPro DOMAIN/s:... 0.02 Orthogroups_2024-Update
Pp1s84_220V6 No alias esp4 (enhanced silencing phenotype 4) binding 0.02 Orthogroups_2024-Update
Seita.5G281700.1 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 Orthogroups_2024-Update
Sopen09g001300 No alias Symplekin tight junction protein C terminal 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR032460 Symplekin/Pta1_N 101 257
No external refs found!