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Description : (at1g72200 : 115.0) RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G22500.1); Has 9343 Blast hits to 9316 proteins in 282 species: Archae - 0; Bacteria - 4; Metazoa - 2295; Fungi - 806; Plants - 4899; Viruses - 51; Other Eukaryotes - 1288 (source: NCBI BLink). & (q9lrb7|el5_orysa : 80.9) E3 ubiquitin-protein ligase EL5 (EC 6.3.2.-) - Oryza sativa (Rice) & (reliability: 230.0) & (original description: no original description)
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Pseudotsuga release: PSME_00003018-RA | |
| Cluster | HCCA clusters: Cluster_81 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 101273 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Brara.H02311.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| GRMZM2G135011 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.08G070100 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G202500 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU3Hr1G015780.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G028260.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| HORVU5Hr1G079910.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G022590.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| HORVU6Hr1G091610.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| LOC_Os02g33720 | No alias | RING-H2 finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os03g28080 | No alias | ring-H2 zinc finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os05g29710 | No alias | RING-H2 finger protein, putative, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os05g36310 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os06g34870 | No alias | Zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g06540 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os09g29310 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| MA_10106144g0010 | No alias | (at3g16720 : 110.0) RING-H2 protein induced after... | 0.03 | Orthogroups_2024-Update | |
| MA_44828g0020 | No alias | (at3g62690 : 89.0) Encodes a RING-H2 zinc finger protein... | 0.02 | Orthogroups_2024-Update | |
| MA_5319g0010 | No alias | (at1g49230 : 120.0) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| PSME_00003016-RA | No alias | (at1g72200 : 114.0) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
| PSME_00010570-RA | No alias | (at4g10150 : 105.0) RING/U-box superfamily protein;... | 0.05 | Orthogroups_2024-Update | |
| Potri.008G025300 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.4G088200.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Seita.5G148800.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.06 | Orthogroups_2024-Update | |
| Seita.8G248200.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Seita.9G341100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G114200.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.11 | Orthogroups_2024-Update | |
| Sobic.006G092200.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.08 | Orthogroups_2024-Update | |
| Sobic.009G110200.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Solyc08g076830 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| Sopen04g004890 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update | |
| Sopen04g036320 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000290 | deadenylation-dependent decapping of nuclear-transcribed mRNA | IEP | Predicted GO |
| BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Predicted GO |
| BP | GO:0006401 | RNA catabolic process | IEP | Predicted GO |
| BP | GO:0006402 | mRNA catabolic process | IEP | Predicted GO |
| MF | GO:0008047 | enzyme activator activity | IEP | Predicted GO |
| BP | GO:0009057 | macromolecule catabolic process | IEP | Predicted GO |
| BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
| BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
| BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
| BP | GO:0016071 | mRNA metabolic process | IEP | Predicted GO |
| BP | GO:0019439 | aromatic compound catabolic process | IEP | Predicted GO |
| MF | GO:0030234 | enzyme regulator activity | IEP | Predicted GO |
| BP | GO:0034655 | nucleobase-containing compound catabolic process | IEP | Predicted GO |
| BP | GO:0043085 | positive regulation of catalytic activity | IEP | Predicted GO |
| MF | GO:0043531 | ADP binding | IEP | Predicted GO |
| BP | GO:0044093 | positive regulation of molecular function | IEP | Predicted GO |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Predicted GO |
| BP | GO:0044270 | cellular nitrogen compound catabolic process | IEP | Predicted GO |
| BP | GO:0046700 | heterocycle catabolic process | IEP | Predicted GO |
| BP | GO:0048519 | negative regulation of biological process | IEP | Predicted GO |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Predicted GO |
| BP | GO:0065009 | regulation of molecular function | IEP | Predicted GO |
| MF | GO:0098772 | molecular function regulator | IEP | Predicted GO |
| BP | GO:1901361 | organic cyclic compound catabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 148 | 191 |
| No external refs found! |