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  5. PSME_00003042-RA

PSME_00003042-RA


Description : (at4g20140 : 307.0) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.; GASSHO1 (GSO1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, embryo development, epidermis development; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT5G44700.1); Has 301150 Blast hits to 144127 proteins in 5007 species: Archae - 193; Bacteria - 28594; Metazoa - 96322; Fungi - 11667; Plants - 129816; Viruses - 411; Other Eukaryotes - 34147 (source: NCBI BLink). & (p93194|rpk1_iponi : 238.0) Receptor-like protein kinase precursor (EC 2.7.11.1) - Ipomoea nil (Japanese morning glory) (Pharbitis nil) & (reliability: 614.0) & (original description: no original description)


Gene families : OG_42_0002753 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002753_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003042-RA
Cluster HCCA clusters: Cluster_250

Target Alias Description ECC score Gene Family Method Actions
MA_10426304g0010 No alias (at3g05660 : 99.8) receptor like protein 33 (RLP33);... 0.04 Orthogroups_2024-Update
MA_10432854g0010 No alias (at2g34930 : 178.0) disease resistance family protein /... 0.07 Orthogroups_2024-Update
MA_177143g0010 No alias (at3g05660 : 87.8) receptor like protein 33 (RLP33);... 0.03 Orthogroups_2024-Update
MA_53782g0010 No alias (at1g72300 : 103.0) Encodes a leucine-rich repeat... 0.03 Orthogroups_2024-Update
MA_82361g0020 No alias (at3g05660 : 111.0) receptor like protein 33 (RLP33);... 0.06 Orthogroups_2024-Update
MA_827806g0010 No alias (at3g05660 : 132.0) receptor like protein 33 (RLP33);... 0.04 Orthogroups_2024-Update
PSME_00016975-RA No alias (at1g35710 : 307.0) Protein kinase family protein with... 0.11 Orthogroups_2024-Update
PSME_00019487-RA No alias (at5g46330 : 298.0) Encodes a leucine-rich repeat... 0.08 Orthogroups_2024-Update
PSME_00020592-RA No alias (at3g47570 : 181.0) Leucine-rich repeat protein kinase... 0.05 Orthogroups_2024-Update
PSME_00029120-RA No alias (at5g46330 : 346.0) Encodes a leucine-rich repeat... 0.07 Orthogroups_2024-Update
PSME_00033428-RA No alias (at4g20140 : 253.0) Encodes GASSHO1 (GSO1), a putative... 0.05 Orthogroups_2024-Update
PSME_00035252-RA No alias (at3g28890 : 187.0) receptor like protein 43 (RLP43);... 0.09 Orthogroups_2024-Update
PSME_00039642-RA No alias (at5g44700 : 327.0) Encodes GASSHO2 (GSO2), a putative... 0.08 Orthogroups_2024-Update
PSME_00039733-RA No alias (at5g46330 : 311.0) Encodes a leucine-rich repeat... 0.07 Orthogroups_2024-Update
PSME_00042435-RA No alias (at5g46330 : 350.0) Encodes a leucine-rich repeat... 0.07 Orthogroups_2024-Update
PSME_00043444-RA No alias (at4g08850 : 250.0) Leucine-rich repeat receptor-like... 0.04 Orthogroups_2024-Update
PSME_00043940-RA No alias (at5g46330 : 333.0) Encodes a leucine-rich repeat... 0.09 Orthogroups_2024-Update
PSME_00046095-RA No alias (at3g05660 : 121.0) receptor like protein 33 (RLP33);... 0.06 Orthogroups_2024-Update
PSME_00047737-RA No alias (at1g35710 : 324.0) Protein kinase family protein with... 0.09 Orthogroups_2024-Update
PSME_00048588-RA No alias (at3g28890 : 241.0) receptor like protein 43 (RLP43);... 0.03 Orthogroups_2024-Update
PSME_00049161-RA No alias (at4g20140 : 363.0) Encodes GASSHO1 (GSO1), a putative... 0.03 Orthogroups_2024-Update
PSME_00053048-RA No alias (at5g25910 : 241.0) putative disease resistance protein... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
MF GO:0016740 transferase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
MF GO:0043167 ion binding IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043412 macromolecule modification IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140096 catalytic activity, acting on a protein IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 180 202
IPR001611 Leu-rich_rpt 494 552
IPR001611 Leu-rich_rpt 912 968
IPR001611 Leu-rich_rpt 599 655
No external refs found!