1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00003113-RA

PSME_00003113-RA


Description : (at3g25810 : 250.0) Terpenoid cyclases/Protein prenyltransferases superfamily protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: terpene synthase-like sequence-1,8-cineole (TAIR:AT3G25820.1); Has 1745 Blast hits to 1713 proteins in 179 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1740; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). & (p59287|cass_ricco : 249.0) Casbene synthase, chloroplast precursor (EC 4.2.3.8) - Ricinus communis (Castor bean) & (reliability: 500.0) & (original description: no original description)


Gene families : OG_42_0000258 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000258_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003113-RA
Cluster HCCA clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Brara.F03314.1 No alias EC_4.2 carbon-oxygen lyase &... 0.03 Orthogroups_2024-Update
MA_10435706g0010 No alias (p93665|dcs1_goshi : 286.0) (+)-delta-cadinene synthase... 0.04 Orthogroups_2024-Update
MA_1830g0010 No alias (p59287|cass_ricco : 269.0) Casbene synthase,... 0.04 Orthogroups_2024-Update
PSME_00003264-RA No alias (at4g02780 : 395.0) Catalyzes the conversion of... 0.05 Orthogroups_2024-Update
PSME_00027421-RA No alias (o04408|ksa_pea : 118.0) Ent-kaurene synthase A,... 0.04 Orthogroups_2024-Update
PSME_00044370-RA No alias (at4g16730 : 128.0) In the Col ecotype, no functional... 0.05 Orthogroups_2024-Update
Potri.017G041700 No alias Terpenoid cyclases/Protein prenyltransferases superfamily protein 0.02 Orthogroups_2024-Update
Potri.T001000 No alias terpene synthase-like sequence-1,8-cineole 0.02 Orthogroups_2024-Update
Solyc01g105870 No alias (E)-beta-ocimene synthase (AHRD V1 **** Q5CD81_CITUN)%3B... 0.04 Orthogroups_2024-Update
Solyc01g105900 No alias Beta myrcene/limonene synthase (AHRD V3.3 *** G1JUH4_SOLLC) 0.03 Orthogroups_2024-Update
Solyc01g105920 No alias (E)-beta-ocimene synthase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA InterProScan predictions
MF GO:0010333 terpene synthase activity IEA InterProScan predictions
MF GO:0016829 lyase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004347 glucose-6-phosphate isomerase activity IEP Predicted GO
MF GO:0004857 enzyme inhibitor activity IEP Predicted GO
MF GO:0004866 endopeptidase inhibitor activity IEP Predicted GO
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0009415 response to water IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
MF GO:0016860 intramolecular oxidoreductase activity IEP Predicted GO
MF GO:0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0030414 peptidase inhibitor activity IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
MF GO:0061134 peptidase regulator activity IEP Predicted GO
MF GO:0061135 endopeptidase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
InterPro domains Description Start Stop
IPR001906 Terpene_synth_N 32 227
IPR005630 Terpene_synthase_metal-bd 263 536
No external refs found!