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  5. PSME_00003154-RA

PSME_00003154-RA


Description : (at4g32460 : 351.0) FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G11420.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). & (reliability: 702.0) & (original description: no original description)


Gene families : OG_42_0000355 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000355_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003154-RA
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
At3g08030 No alias F17A17.37 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFB1] 0.02 Orthogroups_2024-Update
Brara.A00547.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E00975.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os03g59300 No alias expressed protein 0.02 Orthogroups_2024-Update
LOC_Os07g04050 No alias expressed protein 0.02 Orthogroups_2024-Update
MA_10432489g0010 No alias (at4g32460 : 199.0) FUNCTIONS IN: molecular_function... 0.03 Orthogroups_2024-Update
Potri.011G087500 No alias Protein of unknown function, DUF642 0.02 Orthogroups_2024-Update
Solyc02g070540 No alias carbohydrate binding domain-containing protein 0.02 Orthogroups_2024-Update
Sopen02g019630 No alias Protein of unknown function (DUF642) 0.02 Orthogroups_2024-Update
Sopen04g007700 No alias Protein of unknown function (DUF642) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Predicted GO
MF GO:0004222 metalloendopeptidase activity IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008237 metallopeptidase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0031011 Ino80 complex IEP Predicted GO
CC GO:0031012 extracellular matrix IEP Predicted GO
CC GO:0033202 DNA helicase complex IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044421 extracellular region part IEP Predicted GO
CC GO:0044454 nuclear chromosome part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
CC GO:0070603 SWI/SNF superfamily-type complex IEP Predicted GO
CC GO:0097346 INO80-type complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006946 DUF642 199 363
IPR006946 DUF642 27 185
No external refs found!