PSME_00003207-RA


Description : (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G18750.1); Has 54534 Blast hits to 14239 proteins in 270 species: Archae - 2; Bacteria - 13; Metazoa - 57; Fungi - 143; Plants - 53473; Viruses - 0; Other Eukaryotes - 846 (source: NCBI BLink). & (q76c99|rf1_orysa : 150.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1342.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003207-RA

Target Alias Description ECC score Gene Family Method Actions
82058 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
At2g36730 No alias Pentatricopeptide repeat-containing protein At2g36730... 0.04 Orthogroups_2024-Update
Bradi1g22990 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g36010 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g47170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g51700 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g53600 No alias pentatricopeptide (PPR) repeat-containing protein 0.03 Orthogroups_2024-Update
Bradi4g40340 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.E03491.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G161368 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.09G168800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G206000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
HORVU2Hr1G081690.1 No alias RNA editing factor *(OTP86) 0.04 Orthogroups_2024-Update
MA_3317g0020 No alias (at4g13650 : 607.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.09 Orthogroups_2024-Update
MA_778985g0010 No alias (at2g27610 : 621.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00013800-RA No alias (at2g03880 : 405.0) Pentatricopeptide repeat (PPR)... 0.06 Orthogroups_2024-Update
Pp1s26_175V6 No alias T28P6.20; pentatricopeptide (PPR) repeat-containing... 0.03 Orthogroups_2024-Update
Seita.7G324400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G017200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.8G097200.1 No alias Unknown function 0.07 Orthogroups_2024-Update
Sobic.001G440300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G358900.3 No alias RNA editing factor *(OTP90) 0.03 Orthogroups_2024-Update
Sobic.003G336400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.003G433600.1 No alias RNA editing factor *(OTP72) 0.03 Orthogroups_2024-Update
Sobic.009G238700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen01g038950 No alias PPR repeat 0.03 Orthogroups_2024-Update
Sopen02g019790 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen07g017190 No alias PPR repeat family 0.03 Orthogroups_2024-Update
Sopen09g004810 No alias PPR repeat 0.05 Orthogroups_2024-Update
Sopen11g009180 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 663 710
IPR002885 Pentatricopeptide_repeat 158 205
IPR002885 Pentatricopeptide_repeat 562 609
IPR002885 Pentatricopeptide_repeat 359 407
IPR002885 Pentatricopeptide_repeat 460 509
IPR002885 Pentatricopeptide_repeat 259 306
IPR002885 Pentatricopeptide_repeat 535 560
IPR002885 Pentatricopeptide_repeat 738 761
IPR032867 DYW_dom 836 949
No external refs found!