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  5. PSME_00003567-RA

PSME_00003567-RA


Description : (at4g13650 : 593.0) Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G16480.1); Has 61118 Blast hits to 14026 proteins in 284 species: Archae - 2; Bacteria - 18; Metazoa - 154; Fungi - 167; Plants - 59907; Viruses - 0; Other Eukaryotes - 870 (source: NCBI BLink). & (q76c99|rf1_orysa : 181.0) Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) - Oryza sativa (Rice) & (reliability: 1186.0) & (original description: no original description)


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003567-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
128850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
At2g01510 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.03 Orthogroups_2024-Update
At2g39620 No alias Pentatricopeptide repeat-containing protein At2g39620... 0.03 Orthogroups_2024-Update
Bradi1g01280 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g14160 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Orthogroups_2024-Update
Bradi1g59070 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi1g72290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g04723 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g09441 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g62320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi3g40131 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g20810 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Orthogroups_2024-Update
Brara.A00314.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E03135.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.F03378.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Glyma.02G160400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU4Hr1G032070.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU4Hr1G064880.2 No alias Unknown function 0.05 Orthogroups_2024-Update
HORVU5Hr1G047290.1 No alias Unknown function 0.07 Orthogroups_2024-Update
HORVU7Hr1G038460.2 No alias Unknown function 0.04 Orthogroups_2024-Update
MA_10426261g0020 No alias (at2g22070 : 612.0) pentatricopeptide (PPR)... 0.05 Orthogroups_2024-Update
MA_10428121g0010 No alias (at4g37170 : 449.0) Pentatricopeptide repeat (PPR)... 0.04 Orthogroups_2024-Update
MA_25729g0010 No alias (at2g22070 : 551.0) pentatricopeptide (PPR)... 0.07 Orthogroups_2024-Update
MA_286190g0010 No alias (at3g63370 : 605.0) Encodes a chloroplast RNA editing... 0.04 Orthogroups_2024-Update
MA_50118g0010 No alias (at3g03580 : 671.0) Tetratricopeptide repeat (TPR)-like... 0.07 Orthogroups_2024-Update
MA_66417g0010 No alias (at2g22070 : 634.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
MA_75255g0010 No alias (at4g33170 : 685.0) Tetratricopeptide repeat (TPR)-like... 0.05 Orthogroups_2024-Update
MA_77675g0010 No alias (at4g13650 : 598.0) Pentatricopeptide repeat (PPR)... 0.09 Orthogroups_2024-Update
MA_9354530g0010 No alias (at1g11290 : 613.0) Pentatricopeptide Repeat Protein... 0.05 Orthogroups_2024-Update
PSME_00001719-RA No alias (at4g18750 : 701.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.006G211400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Pp1s13_264V6 No alias F4I10.100; pentatricopeptide (PPR) repeat-containing... 0.02 Orthogroups_2024-Update
Seita.1G205700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.1G290500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.4G225800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.5G124400.1 No alias RNA editing factor *(OTP81) 0.04 Orthogroups_2024-Update
Seita.8G017200.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.003G030100.1 No alias RNA editing factor *(CWM1) 0.04 Orthogroups_2024-Update
Sopen07g003070 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 348 396
IPR002885 Pentatricopeptide_repeat 449 496
IPR002885 Pentatricopeptide_repeat 551 597
IPR002885 Pentatricopeptide_repeat 652 700
IPR002885 Pentatricopeptide_repeat 146 194
IPR002885 Pentatricopeptide_repeat 248 294
IPR002885 Pentatricopeptide_repeat 46 92
IPR002885 Pentatricopeptide_repeat 524 548
IPR002885 Pentatricopeptide_repeat 626 651
IPR002885 Pentatricopeptide_repeat 726 750
IPR002885 Pentatricopeptide_repeat 18 41
IPR002885 Pentatricopeptide_repeat 221 245
IPR002885 Pentatricopeptide_repeat 795 820
No external refs found!