1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00003592-RA

PSME_00003592-RA


Description : (at4g34160 : 230.0) encodes a cyclin D-type protein involved in the switch from cell proliferation to the final stages of differentiation. The gene is transcriptionally regulated by cytokinin and brassinosteroid. Protein interacts with cyclin-dependent kinase inhibitor ICK1.; CYCLIN D3;1 (CYCD3;1); CONTAINS InterPro DOMAIN/s: Cyclin, C-terminal (InterPro:IPR004367), Cyclin D (InterPro:IPR015451), Cyclin-like (InterPro:IPR011028), Cyclin-related (InterPro:IPR013763), Cyclin, N-terminal (InterPro:IPR006671), Cyclin (InterPro:IPR006670); BEST Arabidopsis thaliana protein match is: CYCLIN D3;2 (TAIR:AT5G67260.1); Has 3155 Blast hits to 3153 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1504; Fungi - 362; Plants - 1012; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 460.0) & (original description: no original description)


Gene families : OG_42_0000136 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000136_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003592-RA
Cluster HCCA clusters: Cluster_74

Target Alias Description ECC score Gene Family Method Actions
A4A49_04424 No alias putative cyclin-d6-1 0.03 Orthogroups_2024-Update
A4A49_04871 No alias cyclin-d3-2 0.04 Orthogroups_2024-Update
Bradi4g32556 No alias CYCLIN D4;1 0.03 Orthogroups_2024-Update
Brara.A02151.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Brara.F02409.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
Brara.G01181.1 No alias regulatory protein *(CYCD) of cell cycle 0.02 Orthogroups_2024-Update
GRMZM2G007130 No alias cyclin d5;1 0.02 Orthogroups_2024-Update
GRMZM2G140633 No alias CYCLIN D4;1 0.02 Orthogroups_2024-Update
GRMZM2G476685 No alias CYCLIN D1;1 0.03 Orthogroups_2024-Update
Glyma.05G097300 No alias CYCLIN D3;2 0.04 Orthogroups_2024-Update
Glyma.12G199300 No alias Cyclin D6;1 0.03 Orthogroups_2024-Update
Glyma.13G247600 No alias Cyclin D6;1 0.03 Orthogroups_2024-Update
MA_94639g0010 No alias (at1g70210 : 160.0) Encodes a D-type cyclin that... 0.04 Orthogroups_2024-Update
Potri.008G146600 No alias CYCLIN D1;1 0.04 Orthogroups_2024-Update
Potri.014G016700 No alias cyclin d5;1 0.04 Orthogroups_2024-Update
Seita.8G251100.1 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Sobic.001G166800.1 No alias regulatory protein *(CYCD) of cell cycle 0.01 Orthogroups_2024-Update
Sobic.005G231400.2 No alias regulatory protein *(CYCD) of cell cycle 0.03 Orthogroups_2024-Update
Solyc03g006670 No alias cyclinD6_2 0.02 Orthogroups_2024-Update
Solyc05g006050 No alias cyclinD1_1 0.02 Orthogroups_2024-Update
Solyc07g054950 No alias cyclinD6_1 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004143 diacylglycerol kinase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
BP GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
InterPro domains Description Start Stop
IPR006671 Cyclin_N 112 225
IPR004367 Cyclin_C-dom 227 328
No external refs found!