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  5. PSME_00003604-RA

PSME_00003604-RA


Description : (at5g56680 : 587.0) Encodes a putative cytosolic asparaginyl-tRNA synthetase.; SYNC1; FUNCTIONS IN: in 6 functions; INVOLVED IN: response to cadmium ion, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: cotyledon, guard cell, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold (InterPro:IPR012340), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR004522), WHEP-TRS (InterPro:IPR000738), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Aspartyl/Asparaginyl-tRNA synthetase, class IIb (InterPro:IPR002312), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150); BEST Arabidopsis thaliana protein match is: Class II aminoacyl-tRNA and biotin synthetases superfamily protein (TAIR:AT1G70980.1); Has 19343 Blast hits to 13725 proteins in 2674 species: Archae - 682; Bacteria - 14860; Metazoa - 615; Fungi - 765; Plants - 223; Viruses - 0; Other Eukaryotes - 2198 (source: NCBI BLink). & (reliability: 1174.0) & (original description: no original description)


Gene families : OG_42_0001608 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001608_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003604-RA
Cluster HCCA clusters: Cluster_162

Target Alias Description ECC score Gene Family Method Actions
MA_377460g0010 No alias (at5g56680 : 558.0) Encodes a putative cytosolic... 0.04 Orthogroups_2024-Update
Potri.002G249700 No alias asparaginyl-tRNA synthetase 2 0.03 Orthogroups_2024-Update
Sopen09g020120 No alias tRNA synthetases class II (D, K and N) 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA InterProScan predictions
MF GO:0004812 aminoacyl-tRNA ligase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006418 tRNA aminoacylation for protein translation IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0007275 multicellular organism development IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
CC GO:0016021 integral component of membrane IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
CC GO:0031224 intrinsic component of membrane IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0032501 multicellular organismal process IEP Predicted GO
BP GO:0032502 developmental process IEP Predicted GO
MF GO:0043531 ADP binding IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
BP GO:0048856 anatomical structure development IEP Predicted GO
InterPro domains Description Start Stop
IPR004364 aa-tRNA-synt_II 404 670
IPR004364 aa-tRNA-synt_II 258 321
No external refs found!