1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00003876-RA

PSME_00003876-RA


Description : (o48660|spde_nicsy : 444.0) Spermidine synthase (EC 2.5.1.16) (Putrescine aminopropyltransferase) (Aminopropyltransferase) - Nicotiana sylvestris (Wood tobacco) & (at1g23820 : 441.0) Spermidine synthase.; spermidine synthase 1 (SPDS1); FUNCTIONS IN: spermidine synthase activity; INVOLVED IN: spermidine biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Spermine synthase (InterPro:IPR001045); BEST Arabidopsis thaliana protein match is: spermidine synthase 2 (TAIR:AT1G70310.1); Has 5225 Blast hits to 5225 proteins in 1497 species: Archae - 169; Bacteria - 2879; Metazoa - 350; Fungi - 195; Plants - 413; Viruses - 0; Other Eukaryotes - 1219 (source: NCBI BLink). & (reliability: 882.0) & (original description: no original description)


Gene families : OG_42_0001075 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001075_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003876-RA
Cluster HCCA clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
A4A49_05615 No alias putrescine n-methyltransferase 1 0.02 Orthogroups_2024-Update
Solyc04g026030 No alias Spermidine synthase (AHRD V3.3 *** SPDE_NICSY) 0.03 Orthogroups_2024-Update
Sopen03g003220 No alias Spermine/spermidine synthase 0.03 Orthogroups_2024-Update
Sopen05g001710 No alias Spermine/spermidine synthase 0.02 Orthogroups_2024-Update
evm.model.contig_2391.4 No alias (q9ztr1|spd1_pea : 205.0) Spermidine synthase 1 (EC... 0.02 Orthogroups_2024-Update
evm.model.tig00000581.33 No alias (at1g23820 : 266.0) Spermidine synthase.; spermidine... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Predicted GO
BP GO:0050790 regulation of catalytic activity IEP Predicted GO
BP GO:0065009 regulation of molecular function IEP Predicted GO
InterPro domains Description Start Stop
IPR035246 Spermidine_synt_N 111 158
No external refs found!