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  5. PSME_00003880-RA

PSME_00003880-RA


Description : (at5g03760 : 499.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 998.0) & (original description: no original description)


Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003880-RA

Target Alias Description ECC score Gene Family Method Actions
140200 No alias Cellulose-synthase-like C5 0.01 Orthogroups_2024-Update
Glyma.14G090000 No alias Cellulose-synthase-like C12 0.01 Orthogroups_2024-Update
PSME_00037100-RA No alias (at5g03760 : 233.0) encodes a beta-mannan synthase that... 0.01 Orthogroups_2024-Update
Potri.008G026400 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.01 Orthogroups_2024-Update
Sopen09g003750 No alias Glycosyltransferase like family 2 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001173 Glyco_trans_2-like 9 155
No external refs found!