1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00003883-RA

PSME_00003883-RA


Description : (at5g08380 : 190.0) alpha-galactosidase 1 (AGAL1); FUNCTIONS IN: alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process, metabolic process, lactose catabolic process; LOCATED IN: apoplast, cell wall, plant-type cell wall; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 27 (InterPro:IPR002241), Aldolase-type TIM barrel (InterPro:IPR013785), Glycoside hydrolase, clan GH-D (InterPro:IPR000111), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: alpha-galactosidase 2 (TAIR:AT5G08370.1); Has 1677 Blast hits to 1666 proteins in 372 species: Archae - 6; Bacteria - 673; Metazoa - 331; Fungi - 272; Plants - 227; Viruses - 0; Other Eukaryotes - 168 (source: NCBI BLink). & (q9fxt4|agal_orysa : 184.0) Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D-galactoside galactohydrolase) - Oryza sativa (Rice) & (reliability: 380.0) & (original description: no original description)


Gene families : OG_42_0000657 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000657_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003883-RA
Cluster HCCA clusters: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G144100 No alias Melibiase family protein 0.01 Orthogroups_2024-Update
Glyma.16G209800 No alias alpha-galactosidase 2 0.02 Orthogroups_2024-Update
HORVU1Hr1G043830.1 No alias alpha-galactosidase *(AGAL) & EC_3.2 glycosylase 0.01 Orthogroups_2024-Update
LOC_Os07g48160 No alias alpha-galactosidase precursor, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00005679-RA No alias (at5g08370 : 555.0) alpha-galactosidase 2 (AGAL2);... 0.01 Orthogroups_2024-Update
PSME_00015343-RA No alias (at3g56310 : 399.0) Melibiase family protein; FUNCTIONS... 0.02 Orthogroups_2024-Update
PSME_00024089-RA No alias (at5g08380 : 301.0) alpha-galactosidase 1 (AGAL1);... 0.01 Orthogroups_2024-Update
PSME_00037900-RA No alias (q9fxt4|agal_orysa : 258.0) Alpha-galactosidase... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006855 drug transmembrane transport IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0015238 drug transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
BP GO:0015893 drug transport IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002241 Glyco_hydro_27 28 162
No external refs found!