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  5. PSME_00003903-RA

PSME_00003903-RA


Description : (at2g05630 : 156.0) in the Arabidopsis autophagy pathway; ATG8D; FUNCTIONS IN: microtubule binding; INVOLVED IN: autophagy; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT1G62040.2); Has 1504 Blast hits to 1502 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 717; Fungi - 172; Plants - 303; Viruses - 3; Other Eukaryotes - 309 (source: NCBI BLink). & (reliability: 304.0) & (original description: no original description)


Gene families : OG_42_0000932 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000932_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003903-RA
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
At4g21980 No alias Autophagy-related protein [Source:UniProtKB/TrEMBL;Acc:A8MS84] 0.02 Orthogroups_2024-Update
Mp5g05930.1 No alias ATG8 autophagosome ubiquitin-fold protein 0.02 Orthogroups_2024-Update
PSME_00003902-RA No alias (at4g21980 : 153.0) Encodes APG8, a component of... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEA InterProScan predictions
CC GO:0005737 cytoplasm IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003746 translation elongation factor activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
MF GO:0015267 channel activity IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
MF GO:0022803 passive transmembrane transporter activity IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0071702 organic substance transport IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR004241 Atg8-like 7 105
IPR007242 Atg12 131 208
No external refs found!