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  5. PSME_00003940-RA

PSME_00003940-RA


Description : (at1g79740 : 137.0) hAT transposon superfamily; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656), Protein of unknown function DUF659 (InterPro:IPR007021); BEST Arabidopsis thaliana protein match is: hAT transposon superfamily (TAIR:AT4G15020.2); Has 899 Blast hits to 801 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 5; Plants - 875; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink). & (reliability: 264.0) & (original description: no original description)


Gene families : OG_42_0000049 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000049_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003940-RA
Cluster HCCA clusters: Cluster_289

Target Alias Description ECC score Gene Family Method Actions
MA_171023g0020 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00025529-RA No alias (at1g79740 : 126.0) hAT transposon superfamily;... 0.05 Orthogroups_2024-Update
PSME_00033557-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00041191-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00041319-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00052149-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00055084-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00055607-RA No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
Solyc02g043850 No alias No description available 0.03 Orthogroups_2024-Update
Sopen09g001560 No alias hAT family C-terminal dimerisation region 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR007021 DUF659 1 91
No external refs found!