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  5. PSME_00003947-RA

PSME_00003947-RA


Description : (at5g19420 : 205.0) Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain; FUNCTIONS IN: chromatin binding, zinc ion binding, Ran GTPase binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, FYVE-type (InterPro:IPR000306), Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Zinc finger, FYVE-related (InterPro:IPR017455), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Pleckstrin homology-type (InterPro:IPR011993), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain (TAIR:AT5G12350.1). & (reliability: 410.0) & (original description: no original description)


Gene families : OG_42_0000452 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00003947-RA
Cluster HCCA clusters: Cluster_254

Target Alias Description ECC score Gene Family Method Actions
Bradi1g45250 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Bradi2g26807 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Bradi2g61670 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Bradi3g51950 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Bradi5g26867 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Glyma.03G040800 No alias Regulator of chromosome condensation (RCC1) family with... 0.03 Orthogroups_2024-Update
Pp1s51_210V6 No alias F7K24.170; expressed protein [Arabidopsis thaliana] 0.01 Orthogroups_2024-Update
Seita.5G455200.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G428100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G217400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc12g099740 No alias Regulator of chromosome condensation (RCC1) family with... 0.02 Orthogroups_2024-Update
Sopen03g035290 No alias Regulator of chromosome condensation (RCC1) repeat 0.02 Orthogroups_2024-Update
Sopen12g034380 No alias Regulator of chromosome condensation (RCC1) repeat 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005667 transcription factor complex IEP Predicted GO
CC GO:0005669 transcription factor TFIID complex IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044798 nuclear transcription factor complex IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR027988 BRX_N 52 84
IPR013591 Brevis_radix_dom 202 256
No external refs found!