PSME_00003977-RA

Description : (at4g19380 : 520.0) Long-chain fatty alcohol dehydrogenase family protein; FUNCTIONS IN: electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Glucose-methanol-choline oxidoreductase, N-terminal (InterPro:IPR000172), Glucose-methanol-choline oxidoreductase, C-terminal (InterPro:IPR007867), Long-chain fatty alcohol dehydrogenase (InterPro:IPR012400); BEST Arabidopsis thaliana protein match is: Long-chain fatty alcohol dehydrogenase family protein (TAIR:AT4G28570.1); Has 4189 Blast hits to 4124 proteins in 819 species: Archae - 35; Bacteria - 2697; Metazoa - 100; Fungi - 264; Plants - 164; Viruses - 0; Other Eukaryotes - 929 (source: NCBI BLink). & (reliability: 1040.0) & (original description: no original description)

Gene families : OG_42_0001140 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001140_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00003977-RA
Cluster	HCCA clusters: Cluster_59

Target	Alias	Description	ECC score	Gene Family Method
At3g23410	No alias	Long-chain-alcohol oxidase FAO3...	0.03	Orthogroups_2024-Update
GRMZM2G066618	No alias	Long-chain fatty alcohol dehydrogenase family protein	0.02	Orthogroups_2024-Update
Glyma.01G152900	No alias	Long-chain fatty alcohol dehydrogenase family protein	0.04	Orthogroups_2024-Update
Glyma.12G132800	No alias	fatty alcohol oxidase 3	0.03	Orthogroups_2024-Update
HORVU0Hr1G015950.8	No alias	Unknown function	0.03	Orthogroups_2024-Update
LOC_Os10g33460	No alias	alcohol oxidase, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os10g33520	No alias	alcohol oxidase, putative, expressed	0.05	Orthogroups_2024-Update
MA_9483g0010	No alias	(at4g19380 : 470.0) Long-chain fatty alcohol...	0.04	Orthogroups_2024-Update
Seita.9G224300.1	No alias	fatty alcohol oxidase *(FAO)	0.02	Orthogroups_2024-Update
Solyc08g005630	No alias	Long-chain-alcohol oxidase (AHRD V3.3 *** K4CI54_SOLLC)	0.04	Orthogroups_2024-Update
Solyc09g072610	No alias	Long-chain-alcohol oxidase (AHRD V3.3 *** K4CUT7_SOLLC)	0.03	Orthogroups_2024-Update
Sopen08g001680	No alias	GMC oxidoreductase	0.02	Orthogroups_2024-Update
Sopen09g028420	No alias	GMC oxidoreductase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEA	InterProScan predictions
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
MF	GO:0050660	flavin adenine dinucleotide binding	IEA	InterProScan predictions
MF	GO:0050662	coenzyme binding	None	Extended
BP	GO:0055114	oxidation-reduction process	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004568	chitinase activity	IEP	Predicted GO
MF	GO:0005507	copper ion binding	IEP	Predicted GO
BP	GO:0006022	aminoglycan metabolic process	IEP	Predicted GO
BP	GO:0006026	aminoglycan catabolic process	IEP	Predicted GO
BP	GO:0006030	chitin metabolic process	IEP	Predicted GO
BP	GO:0006032	chitin catabolic process	IEP	Predicted GO
BP	GO:0006040	amino sugar metabolic process	IEP	Predicted GO
BP	GO:0006308	DNA catabolic process	IEP	Predicted GO
BP	GO:0006629	lipid metabolic process	IEP	Predicted GO
BP	GO:0006631	fatty acid metabolic process	IEP	Predicted GO
BP	GO:0006633	fatty acid biosynthetic process	IEP	Predicted GO
MF	GO:0008234	cysteine-type peptidase activity	IEP	Predicted GO
BP	GO:0008610	lipid biosynthetic process	IEP	Predicted GO
BP	GO:0009057	macromolecule catabolic process	IEP	Predicted GO
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Predicted GO
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Predicted GO
MF	GO:0016787	hydrolase activity	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0016790	thiolester hydrolase activity	IEP	Predicted GO
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
BP	GO:0042737	drug catabolic process	IEP	Predicted GO
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044255	cellular lipid metabolic process	IEP	Predicted GO
BP	GO:0046348	amino sugar catabolic process	IEP	Predicted GO
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Predicted GO
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Predicted GO
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Predicted GO
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	Predicted GO
BP	GO:1901565	organonitrogen compound catabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007867	GMC_OxRtase_C	645	778
IPR000172	GMC_OxRdtase_N	281	553

External Links

No external refs found!

PSME_00003977-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation