PSME_00004005-RA

Description : (at1g15890 : 219.0) Disease resistance protein (CC-NBS-LRR class) family; FUNCTIONS IN: ATP binding; INVOLVED IN: N-terminal protein myristoylation, apoptosis, defense response; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Leucine-rich repeat (InterPro:IPR001611), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (CC-NBS-LRR class) family (TAIR:AT5G43730.1); Has 17730 Blast hits to 16510 proteins in 695 species: Archae - 12; Bacteria - 829; Metazoa - 2844; Fungi - 202; Plants - 13567; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink). & (reliability: 434.0) & (original description: no original description)

Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Pseudotsuga release: PSME_00004005-RA
Cluster	HCCA clusters: Cluster_52

Target	Alias	Description	ECC score	Gene Family Method
Bradi5g15560	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
HORVU3Hr1G108500.3	No alias	Unknown function	0.02	Orthogroups_2024-Update
LOC_Os03g10900	No alias	disease resistance protein, putative, expressed	0.02	Orthogroups_2024-Update
MA_10427619g0010	No alias	(at1g69550 : 114.0) disease resistance protein...	0.03	Orthogroups_2024-Update
MA_5183807g0010	No alias	(at4g10780 : 85.5) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
MA_53162g0020	No alias	(at5g43740 : 114.0) Disease resistance protein...	0.03	Orthogroups_2024-Update
MA_549555g0010	No alias	no hits & (original description: no original description)	0.06	Orthogroups_2024-Update
MA_8869735g0010	No alias	(at1g61300 : 128.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
PSME_00004922-RA	No alias	(at1g12280 : 266.0) LRR and NB-ARC domains-containing...	0.05	Orthogroups_2024-Update
PSME_00005482-RA	No alias	(at4g27220 : 208.0) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
PSME_00011110-RA	No alias	(at5g43740 : 165.0) Disease resistance protein...	0.06	Orthogroups_2024-Update
PSME_00011883-RA	No alias	(at4g27220 : 218.0) NB-ARC domain-containing disease...	0.05	Orthogroups_2024-Update
PSME_00016011-RA	No alias	(at5g05400 : 116.0) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
PSME_00018989-RA	No alias	(at4g26090 : 240.0) Encodes a plasma membrane protein...	0.04	Orthogroups_2024-Update
PSME_00027124-RA	No alias	(at4g10780 : 169.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
PSME_00027915-RA	No alias	(at1g15890 : 191.0) Disease resistance protein...	0.06	Orthogroups_2024-Update
PSME_00027916-RA	No alias	(at4g27220 : 83.6) NB-ARC domain-containing disease...	0.03	Orthogroups_2024-Update
PSME_00030472-RA	No alias	(at1g15890 : 234.0) Disease resistance protein...	0.04	Orthogroups_2024-Update
PSME_00037099-RA	No alias	(at4g26090 : 230.0) Encodes a plasma membrane protein...	0.04	Orthogroups_2024-Update
PSME_00045398-RA	No alias	(at1g12280 : 140.0) LRR and NB-ARC domains-containing...	0.03	Orthogroups_2024-Update
PSME_00045900-RA	No alias	(at1g12220 : 213.0) Resistance gene, mediates resistance...	0.03	Orthogroups_2024-Update
PSME_00046780-RA	No alias	(at4g10780 : 218.0) LRR and NB-ARC domains-containing...	0.05	Orthogroups_2024-Update
PSME_00048940-RA	No alias	(at4g27220 : 141.0) NB-ARC domain-containing disease...	0.03	Orthogroups_2024-Update
PSME_00053148-RA	No alias	(at1g12210 : 218.0) RFL1 has high sequence similarity to...	0.04	Orthogroups_2024-Update
PSME_00057017-RA	No alias	(at1g12280 : 226.0) LRR and NB-ARC domains-containing...	0.04	Orthogroups_2024-Update
Potri.011G124000	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T013200	No alias	NB-ARC domain-containing disease resistance protein	0.03	Orthogroups_2024-Update
Potri.T013900	No alias	NB-ARC domain-containing disease resistance protein	0.02	Orthogroups_2024-Update
Potri.T026800	No alias	LRR and NB-ARC domains-containing disease resistance protein	0.03	Orthogroups_2024-Update
Sopen08g004810	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update
Sopen10g028090	No alias	NB-ARC domain	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043531	ADP binding	IEA	InterProScan predictions
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0004672	protein kinase activity	IEP	Predicted GO
MF	GO:0005319	lipid transporter activity	IEP	Predicted GO
MF	GO:0005524	ATP binding	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006464	cellular protein modification process	IEP	Predicted GO
BP	GO:0006468	protein phosphorylation	IEP	Predicted GO
BP	GO:0006793	phosphorus metabolic process	IEP	Predicted GO
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006869	lipid transport	IEP	Predicted GO
MF	GO:0008144	drug binding	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0016301	kinase activity	IEP	Predicted GO
BP	GO:0016310	phosphorylation	IEP	Predicted GO
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Predicted GO
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Predicted GO
BP	GO:0019538	protein metabolic process	IEP	Predicted GO
CC	GO:0033588	Elongator holoenzyme complex	IEP	Predicted GO
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Predicted GO
BP	GO:0036211	protein modification process	IEP	Predicted GO
BP	GO:0043170	macromolecule metabolic process	IEP	Predicted GO
BP	GO:0043412	macromolecule modification	IEP	Predicted GO
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Predicted GO
BP	GO:0044267	cellular protein metabolic process	IEP	Predicted GO
BP	GO:0061024	membrane organization	IEP	Predicted GO
BP	GO:0120009	intermembrane lipid transfer	IEP	Predicted GO
MF	GO:0120013	intermembrane lipid transfer activity	IEP	Predicted GO
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Predicted GO
BP	GO:1901564	organonitrogen compound metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002182	NB-ARC	400	639

External Links

No external refs found!

PSME_00004005-RA

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation