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  5. PSME_00004268-RA

PSME_00004268-RA


Description : (at4g17895 : 259.0) Encodes a ubiquitin-specific protease.; ubiquitin-specific protease 20 (UBP20); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 21 (TAIR:AT5G46740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (reliability: 518.0) & (original description: no original description)


Gene families : OG_42_0000241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004268-RA
Cluster HCCA clusters: Cluster_170

Target Alias Description ECC score Gene Family Method Actions
At4g24560 No alias Ubiquitin carboxyl-terminal hydrolase 16... 0.03 Orthogroups_2024-Update
At5g65450 No alias ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450] 0.03 Orthogroups_2024-Update
Pp1s136_13V6 No alias F28M20.140; ubiquitin carboxyl-terminal hydrolase family... 0.02 Orthogroups_2024-Update
evm.model.tig00000403.102 No alias (at5g10790 : 120.0) Encodes a ubiquitin-specific... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0016579 protein deubiquitination IEA InterProScan predictions
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0022804 active transmembrane transporter activity IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
MF GO:0045735 nutrient reservoir activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001394 Peptidase_C19_UCH 91 378
No external refs found!