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  5. PSME_00004325-RA

PSME_00004325-RA


Description : (at1g10950 : 829.0) Encodes an Arabidopsis Transmembrane nine (TMN) protein. Transmembrane nine (TM9) proteins are localized in the secretory pathway of eukaryotic cells and are involved in cell adhesion and phagocytosis.; transmembrane nine 1 (TMN1); LOCATED IN: integral to membrane, Golgi apparatus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Nonaspanin (TM9SF) (InterPro:IPR004240); BEST Arabidopsis thaliana protein match is: Endomembrane protein 70 protein family (TAIR:AT5G37310.1); Has 1611 Blast hits to 1538 proteins in 326 species: Archae - 0; Bacteria - 16; Metazoa - 610; Fungi - 273; Plants - 454; Viruses - 0; Other Eukaryotes - 258 (source: NCBI BLink). & (reliability: 1658.0) & (original description: no original description)


Gene families : OG_42_0002000 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002000_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004325-RA
Cluster HCCA clusters: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
Bradi4g23990 No alias transmembrane nine 1 0.03 Orthogroups_2024-Update
Bradi4g41270 No alias transmembrane nine 1 0.03 Orthogroups_2024-Update
Brara.F00735.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G420310 No alias transmembrane nine 1 0.02 Orthogroups_2024-Update
Glyma.08G126900 No alias transmembrane nine 1 0.03 Orthogroups_2024-Update
Seita.8G057900.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.004G174700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc11g022540 No alias Transmembrane 9 superfamily member (AHRD V3.3 *** K4D7A1_SOLLC) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006814 sodium ion transport IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0034457 Mpp10 complex IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044452 nucleolar part IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
InterPro domains Description Start Stop
IPR004240 EMP70 92 577
No external refs found!