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  5. PSME_00004350-RA

PSME_00004350-RA


Description : (at1g12220 : 109.0) Resistance gene, mediates resistance against the bacterial pathogen Pseudomonas syringae. Contains a putative nucleotide binding site composed of kinase-1a (or P-loop), kinase-2a, and putative kinase-3a domains, 13 imperfect leucine-rich repeats, a potential leucine zipper, and two uncharacterized motifs that are well conserved in products of previously isolated R genes. Confers resistance to Pseudomonas syringae strains that express avrPphB.; RESISTANT TO P. SYRINGAE 5 (RPS5); CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing protein (InterPro:IPR015766), NB-ARC (InterPro:IPR002182), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: LRR and NB-ARC domains-containing disease resistance protein (TAIR:AT1G12280.1). & (reliability: 218.0) & (original description: no original description)


Gene families : OG_42_0000113 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000113_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004350-RA
Cluster HCCA clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G258200 No alias Disease resistance protein (CC-NBS-LRR class) family 0.03 Orthogroups_2024-Update
HORVU3Hr1G108500.3 No alias Unknown function 0.05 Orthogroups_2024-Update
MA_10435822g0010 No alias (at4g27220 : 227.0) NB-ARC domain-containing disease... 0.03 Orthogroups_2024-Update
MA_460348g0010 No alias (at1g12220 : 103.0) Resistance gene, mediates resistance... 0.03 Orthogroups_2024-Update
MA_53162g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_53162g0020 No alias (at5g43740 : 114.0) Disease resistance protein... 0.03 Orthogroups_2024-Update
MA_549555g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_741495g0010 No alias (at4g27220 : 179.0) NB-ARC domain-containing disease... 0.03 Orthogroups_2024-Update
PSME_00000865-RA No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
PSME_00011882-RA No alias (at1g12220 : 145.0) Resistance gene, mediates resistance... 0.02 Orthogroups_2024-Update
Potri.001G313301 No alias Disease resistance protein (CC-NBS-LRR class) family 0.02 Orthogroups_2024-Update
Potri.011G124000 No alias LRR and NB-ARC domains-containing disease resistance protein 0.03 Orthogroups_2024-Update
Potri.T026900 No alias NB-ARC domain-containing disease resistance protein 0.02 Orthogroups_2024-Update
Seita.7G164900.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen08g004810 No alias NB-ARC domain 0.06 Orthogroups_2024-Update
Sopen10g028090 No alias NB-ARC domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0043531 ADP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004126 cytidine deaminase activity IEP Predicted GO
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Predicted GO
BP GO:0006216 cytidine catabolic process IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
BP GO:0009164 nucleoside catabolic process IEP Predicted GO
BP GO:0009972 cytidine deamination IEP Predicted GO
MF GO:0015035 protein disulfide oxidoreductase activity IEP Predicted GO
MF GO:0015036 disulfide oxidoreductase activity IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Predicted GO
BP GO:0042454 ribonucleoside catabolic process IEP Predicted GO
BP GO:0046087 cytidine metabolic process IEP Predicted GO
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Predicted GO
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Predicted GO
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
MF GO:0071949 FAD binding IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1901658 glycosyl compound catabolic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002182 NB-ARC 262 355
No external refs found!