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  5. PSME_00004358-RA

PSME_00004358-RA


Description : (at4g32520 : 524.0) Encodes a serine hydroxymethyltransferase SHMT3 located in the plastid.; serine hydroxymethyltransferase 3 (SHM3); FUNCTIONS IN: glycine hydroxymethyltransferase activity; INVOLVED IN: glycine metabolic process, L-serine metabolic process; LOCATED IN: chloroplast, plastid; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Serine hydroxymethyltransferase, pyridoxal phosphate binding site (InterPro:IPR019798), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421), Serine hydroxymethyltransferase (InterPro:IPR001085); BEST Arabidopsis thaliana protein match is: serine transhydroxymethyltransferase 1 (TAIR:AT4G37930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). & (p49358|glyn_flapr : 407.0) Serine hydroxymethyltransferase 2, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) - Flaveria pringlei & (reliability: 1048.0) & (original description: no original description)


Gene families : OG_42_0000626 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000626_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004358-RA
Cluster HCCA clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
166496 No alias serine hydroxymethyltransferase 4 0.03 Orthogroups_2024-Update
232016 No alias serine hydroxymethyltransferase 3 0.02 Orthogroups_2024-Update
A4A49_04474 No alias serine hydroxymethyltransferase 4 0.02 Orthogroups_2024-Update
At1g22020 No alias Serine hydroxymethyltransferase 6... 0.02 Orthogroups_2024-Update
At4g32520 No alias Serine hydroxymethyltransferase 3, chloroplastic... 0.02 Orthogroups_2024-Update
Brara.G02412.1 No alias serine hydroxymethyltransferase *(SHM) & serine... 0.02 Orthogroups_2024-Update
Kfl00057_0140 kfl00057_0140_v1.... (at4g32520 : 695.0) Encodes a serine... 0.03 Orthogroups_2024-Update
LOC_Os03g52840 No alias serine hydroxymethyltransferase, mitochondrial... 0.02 Orthogroups_2024-Update
MA_730617g0010 No alias (at4g32520 : 720.0) Encodes a serine... 0.05 Orthogroups_2024-Update
Mp2g07660.1 No alias serine hydroxymethyltransferase 0.01 Orthogroups_2024-Update
Sopen08g019100 No alias Serine hydroxymethyltransferase 0.02 Orthogroups_2024-Update
Sopen12g031830 No alias Serine hydroxymethyltransferase 0.02 Orthogroups_2024-Update
evm.model.contig_4601.5 No alias (at4g13930 : 594.0) Encodes a serine... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006486 protein glycosylation IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030976 thiamine pyrophosphate binding IEP Predicted GO
BP GO:0043413 macromolecule glycosylation IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0070085 glycosylation IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR039429 SHMT-like_dom 88 354
No external refs found!