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  5. PSME_00004398-RA

PSME_00004398-RA


Description : (q850k7|exlb1_orysa : 241.0) Expansin-like B1 precursor (OsEXLB1) (Expensin-related 1) (OsEXPR1) (OsaEXPb3.1) - Oryza sativa (Rice) & (at4g17030 : 238.0) Encodes EXLB1 (expansin-like B1), a member of the expansin family.; expansin-like B1 (EXLB1); INVOLVED IN: sexual reproduction, unidimensional cell growth, plant-type cell wall loosening; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pollen allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), Pollen allergen/expansin, C-terminal (InterPro:IPR007117), Barwin-related endoglucanase (InterPro:IPR009009), Major pollen allergen Lol pI (InterPro:IPR005795), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112); BEST Arabidopsis thaliana protein match is: expansin-like A2 (TAIR:AT4G38400.1); Has 1869 Blast hits to 1866 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1858; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). & (reliability: 476.0) & (original description: no original description)


Gene families : OG_42_0002700 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002700_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004398-RA
Cluster HCCA clusters: Cluster_94

Target Alias Description ECC score Gene Family Method Actions
A4A49_36538 No alias expansin-like b1 0.04 Orthogroups_2024-Update
Brara.C04532.1 No alias beta-like-class expansin 0.03 Orthogroups_2024-Update
Glyma.01G148002 No alias expansin-like A2 0.02 Orthogroups_2024-Update
Glyma.01G204800 No alias expansin-like B1 0.04 Orthogroups_2024-Update
Glyma.11G038300 No alias expansin-like B1 0.02 Orthogroups_2024-Update
MA_41212g0010 No alias (q850k7|exlb1_orysa : 246.0) Expansin-like B1 precursor... 0.04 Orthogroups_2024-Update
Potri.003G083200 No alias expansin-like B1 0.03 Orthogroups_2024-Update
Potri.003G087000 No alias expansin-like B1 0.03 Orthogroups_2024-Update
Sopen08g026410 No alias Rare lipoprotein A (RlpA)-like double-psi beta-barrel 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Predicted GO
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
MF GO:0051213 dioxygenase activity IEP Predicted GO
BP GO:0055114 oxidation-reduction process IEP Predicted GO
InterPro domains Description Start Stop
IPR007117 Expansin_CBD 155 238
IPR009009 RlpA-like_DPBB 68 129
No external refs found!