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  5. PSME_00004568-RA

PSME_00004568-RA


Description : (at3g03740 : 220.0) BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink). & (reliability: 404.0) & (original description: no original description)


Gene families : OG_42_0000025 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000025_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004568-RA
Cluster HCCA clusters: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
270271 No alias BTB-POZ and MATH domain 4 0.04 Orthogroups_2024-Update
Bradi1g30767 No alias BTB/POZ/MATH-domains containing protein 0.03 Orthogroups_2024-Update
Bradi3g18500 No alias BTB-POZ and MATH domain 4 0.02 Orthogroups_2024-Update
GRMZM2G009724 No alias BTB-POZ and MATH domain 1 0.03 Orthogroups_2024-Update
GRMZM2G404188 No alias BTB-POZ and MATH domain 1 0.03 Orthogroups_2024-Update
Glyma.02G272800 No alias BTB-POZ and MATH domain 4 0.03 Orthogroups_2024-Update
LOC_Os10g29260 No alias speckle-type POZ protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os11g41260 No alias snRNP protein, putative, expressed 0.03 Orthogroups_2024-Update
PSME_00022203-RA No alias (at3g03740 : 214.0) BTB-POZ and MATH domain 4 (BPM4);... 0.03 Orthogroups_2024-Update
PSME_00052382-RA No alias (at3g03740 : 193.0) BTB-POZ and MATH domain 4 (BPM4);... 0.03 Orthogroups_2024-Update
Seita.8G145900.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.001G158100.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G249800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G206550.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.010G222300.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
BP GO:0009767 photosynthetic electron transport chain IEP Predicted GO
MF GO:0016168 chlorophyll binding IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
BP GO:0019684 photosynthesis, light reaction IEP Predicted GO
BP GO:0022900 electron transport chain IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 95 169
No external refs found!