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  5. PSME_00004636-RA

PSME_00004636-RA


Description : (at5g03760 : 500.0) encodes a beta-mannan synthase that is required for agrobacterium-mediated plant genetic transformation involves a complex interaction between the bacterium and the host plant. 3' UTR is involved in transcriptional regulation and the gene is expressed in the elongation zone of the root.; ATCSLA09; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 2 (InterPro:IPR001173); BEST Arabidopsis thaliana protein match is: cellulose synthase-like A02 (TAIR:AT5G22740.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). & (reliability: 1000.0) & (original description: no original description)


Gene families : OG_42_0000129 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000129_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004636-RA

Target Alias Description ECC score Gene Family Method Actions
Brara.G00952.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.03 Orthogroups_2024-Update
Brara.I03226.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.01 Orthogroups_2024-Update
Brara.I04464.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.01 Orthogroups_2024-Update
Brara.J01895.1 No alias EC_2.4 glycosyltransferase & mannan synthase *(CSLA) 0.02 Orthogroups_2024-Update
Brara.J02800.1 No alias EC_2.4 glycosyltransferase 0.01 Orthogroups_2024-Update
Brara.K01643.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.01 Orthogroups_2024-Update
Glyma.03G183500 No alias Nucleotide-diphospho-sugar transferases superfamily protein 0.03 Orthogroups_2024-Update
Glyma.13G070300 No alias Cellulose-synthase-like C4 0.03 Orthogroups_2024-Update
Glyma.14G090000 No alias Cellulose-synthase-like C12 0.01 Orthogroups_2024-Update
LOC_Os08g33740 No alias CSLA11 - cellulose synthase-like family A, expressed 0.02 Orthogroups_2024-Update
PSME_00011823-RA No alias (at5g03760 : 850.0) encodes a beta-mannan synthase that... 0.02 Orthogroups_2024-Update
PSME_00024295-RA No alias (at5g03760 : 462.0) encodes a beta-mannan synthase that... 0.03 Orthogroups_2024-Update
PSME_00035601-RA No alias (at5g03760 : 232.0) encodes a beta-mannan synthase that... 0.06 Orthogroups_2024-Update
PSME_00037100-RA No alias (at5g03760 : 233.0) encodes a beta-mannan synthase that... 0.01 Orthogroups_2024-Update
PSME_00038386-RA No alias (at5g03760 : 359.0) encodes a beta-mannan synthase that... 0.01 Orthogroups_2024-Update
PSME_00044497-RA No alias (at5g03760 : 414.0) encodes a beta-mannan synthase that... 0.01 Orthogroups_2024-Update
Pp1s162_130V6 No alias cellulose synthase-like glycosyltransferase family 2 0.02 Orthogroups_2024-Update
Pp1s36_62V6 No alias cellulose synthase-like A2, glycosyltransferase family 2... 0.01 Orthogroups_2024-Update
Seita.5G331000.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Sobic.002G022700.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.01 Orthogroups_2024-Update
Sobic.009G194200.1 No alias 1,4-beta-glucan synthase *(CSLC) & EC_2.4 glycosyltransferase 0.03 Orthogroups_2024-Update
Sopen08g002290 No alias Glycosyltransferase like family 2 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001173 Glyco_trans_2-like 29 179
No external refs found!