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  5. PSME_00004770-RA

PSME_00004770-RA


Description : (at5g01720 : 545.0) RNI-like superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, cysteine-containing subtype (InterPro:IPR006553); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G27920.1); Has 15959 Blast hits to 6468 proteins in 357 species: Archae - 0; Bacteria - 920; Metazoa - 6194; Fungi - 1434; Plants - 4975; Viruses - 16; Other Eukaryotes - 2420 (source: NCBI BLink). & (reliability: 1090.0) & (original description: no original description)


Gene families : OG_42_0001322 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001322_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004770-RA
Cluster HCCA clusters: Cluster_185

Target Alias Description ECC score Gene Family Method Actions
408517 No alias F-box family protein 0.02 Orthogroups_2024-Update
Seita.8G221400.1 No alias substrate adaptor *(RAE1) of SCF E3 ubiquitin ligase complex 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003848 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity IEP Predicted GO
MF GO:0004576 oligosaccharyl transferase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
MF GO:0008375 acetylglucosaminyltransferase activity IEP Predicted GO
MF GO:0008536 Ran GTPase binding IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016854 racemase and epimerase activity IEP Predicted GO
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
MF GO:0050290 sphingomyelin phosphodiesterase D activity IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 321 344
IPR001611 Leu-rich_rpt 400 422
IPR001611 Leu-rich_rpt 224 245
IPR001611 Leu-rich_rpt 173 195
IPR001611 Leu-rich_rpt 121 145
IPR001611 Leu-rich_rpt 552 575
IPR001611 Leu-rich_rpt 71 88
No external refs found!