1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00004864-RA

PSME_00004864-RA


Description : (at1g65730 : 904.0) Arabidopsis thaliana metal-nicotianamine transporter YSL4; YELLOW STRIPE like 7 (YSL7); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: YELLOW STRIPE like 5 (TAIR:AT3G17650.1); Has 1836 Blast hits to 1794 proteins in 556 species: Archae - 19; Bacteria - 893; Metazoa - 0; Fungi - 266; Plants - 510; Viruses - 1; Other Eukaryotes - 147 (source: NCBI BLink). & (reliability: 1808.0) & (original description: no original description)


Gene families : OG_42_0000320 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000320_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004864-RA

Target Alias Description ECC score Gene Family Method Actions
A4A49_27452 No alias metal-nicotianamine transporter ysl3 0.01 Orthogroups_2024-Update
At1g65730 No alias Probable metal-nicotianamine transporter YSL7... 0.01 Orthogroups_2024-Update
At5g53550 No alias YSL3 [Source:UniProtKB/TrEMBL;Acc:A0A178U7D6] 0.02 Orthogroups_2024-Update
Brara.F02656.1 No alias iron chelator transporter *(YSL) & ferric... 0.02 Orthogroups_2024-Update
Brara.H00358.1 No alias iron chelator transporter *(YSL) & ferric... 0.02 Orthogroups_2024-Update
Brara.I00272.1 No alias iron chelator transporter *(YSL) & ferric... 0.01 Orthogroups_2024-Update
GRMZM2G026391 No alias YELLOW STRIPE like 3 0.02 Orthogroups_2024-Update
GRMZM2G085833 No alias YELLOW STRIPE like 6 0.02 Orthogroups_2024-Update
GRMZM2G156599 No alias YELLOW STRIPE like 3 0.03 Orthogroups_2024-Update
Glyma.09G164500 No alias YELLOW STRIPE like 7 0.02 Orthogroups_2024-Update
Glyma.10G172900 No alias YELLOW STRIPE like 1 0.02 Orthogroups_2024-Update
Glyma.20G004300 No alias YELLOW STRIPE like 7 0.02 Orthogroups_2024-Update
HORVU2Hr1G092820.12 No alias iron chelator transporter *(YSL) & ferric... 0.03 Orthogroups_2024-Update
LOC_Os02g42220 No alias transposon protein, putative, unclassified, expressed 0.01 Orthogroups_2024-Update
PSME_00044922-RA No alias (at1g65730 : 907.0) Arabidopsis thaliana... 0.02 Orthogroups_2024-Update
Pp1s2_335V6 No alias oligopeptide transporter opt family 0.01 Orthogroups_2024-Update
Seita.3G017800.1 No alias iron chelator transporter *(YSL) & ferric... 0.06 Orthogroups_2024-Update
Seita.7G075800.1 No alias iron chelator transporter *(YSL) & ferric... 0.01 Orthogroups_2024-Update
Seita.7G172800.1 No alias iron chelator transporter *(YSL) & ferric... 0.02 Orthogroups_2024-Update
Seita.7G173000.1 No alias iron chelator transporter *(YSL) & ferric... 0.03 Orthogroups_2024-Update
Sobic.005G124600.1 No alias iron chelator transporter *(YSL) & ferric... 0.02 Orthogroups_2024-Update
Sobic.006G152500.1 No alias iron chelator transporter *(YSL) & ferric... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR004813 OPT 76 697
No external refs found!