1. Home
  2. Species
  3. Pseudotsuga menziesii
  4. Sequence
  5. PSME_00004891-RA

PSME_00004891-RA


Description : (at1g74930 : 122.0) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; ORA47; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G19210.1); Has 5510 Blast hits to 5399 proteins in 239 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5503; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). & (q6k7e6|erf1_orysa : 80.5) Ethylene-responsive transcription factor 1 (Ethylene-responsive element-binding factor 1) (EREBP-1) (OsEREBP1) - Oryza sativa (Rice) & (reliability: 244.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004891-RA
Cluster HCCA clusters: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
A4A49_16120 No alias ethylene-responsive transcription factor erf061 0.03 Orthogroups_2024-Update
A4A49_21979 No alias ethylene-responsive transcription factor erf034 0.04 Orthogroups_2024-Update
A4A49_34891 No alias dehydration-responsive element-binding protein 3 0.03 Orthogroups_2024-Update
A4A49_36835 No alias ethylene-responsive transcription factor 5 0.02 Orthogroups_2024-Update
AC206951.3_FG016 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
At1g19210 No alias Ethylene-responsive transcription factor ERF017... 0.03 Orthogroups_2024-Update
At1g22985 No alias CRF7 [Source:UniProtKB/TrEMBL;Acc:A0A178W874] 0.04 Orthogroups_2024-Update
At5g61890 No alias Ethylene-responsive transcription factor ERF114... 0.02 Orthogroups_2024-Update
Bradi1g75040 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g56145 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g41543 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Bradi4g41616 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Brara.B00415.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
Brara.C00211.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Brara.C03619.1 No alias subgroup ERF-VII transcription factor & transcription... 0.02 Orthogroups_2024-Update
Brara.C04525.1 No alias subgroup ERF-III transcription factor 0.05 Orthogroups_2024-Update
Brara.D02449.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.08 Orthogroups_2024-Update
Brara.F00133.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Brara.G00808.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Brara.G01933.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.07 Orthogroups_2024-Update
Brara.G03526.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I01985.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Brara.I03088.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.02 Orthogroups_2024-Update
Brara.I04175.1 No alias subgroup ERF-III transcription factor 0.04 Orthogroups_2024-Update
Brara.I05419.1 No alias subgroup ERF-IX transcription factor 0.04 Orthogroups_2024-Update
Brara.I05614.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Brara.J02053.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Brara.K00718.1 No alias transcription factor *(CRF) & subgroup ERF-VI... 0.05 Orthogroups_2024-Update
GRMZM2G003466 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G053503 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G084264 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G111415 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G137341 No alias C-repeat/DRE binding factor 2 0.02 Orthogroups_2024-Update
GRMZM2G174917 No alias DREB and EAR motif protein 3 0.03 Orthogroups_2024-Update
GRMZM2G380377 No alias dehydration response element B1A 0.02 Orthogroups_2024-Update
GRMZM2G421033 No alias DREB and EAR motif protein 3 0.02 Orthogroups_2024-Update
Glyma.03G017300 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Glyma.04G062900 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G111300 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Glyma.06G295300 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.07G044300 No alias related to AP2 12 0.03 Orthogroups_2024-Update
Glyma.07G212400 No alias redox responsive transcription factor 1 0.03 Orthogroups_2024-Update
Glyma.08G137600 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G193400 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G036500 No alias ethylene responsive element binding factor 1 0.04 Orthogroups_2024-Update
Glyma.12G117000 No alias erf domain protein 9 0.03 Orthogroups_2024-Update
Glyma.13G304300 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Glyma.15G095600 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.16G040000 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Glyma.17G169800 No alias DREB and EAR motif protein 3 0.03 Orthogroups_2024-Update
Glyma.18G262800 No alias related to AP2 11 0.04 Orthogroups_2024-Update
Glyma.18G281400 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G142000 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.20G070000 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
HORVU1Hr1G070410.3 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G037540.1 No alias transcription factor *(ERN1) & subgroup ERF-V... 0.04 Orthogroups_2024-Update
HORVU2Hr1G094780.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU5Hr1G080790.1 No alias subgroup ERF-VII transcription factor & transcription... 0.03 Orthogroups_2024-Update
LOC_Os01g54890 No alias ethylene-responsive transcription factor 2, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g42585 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g11860 No alias ethylene-responsive transcription factor, putative, expressed 0.05 Orthogroups_2024-Update
LOC_Os08g07700 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_203191g0010 No alias (at1g28360 : 85.9) encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_329325g0010 No alias (at4g17500 : 94.0) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
MA_436575g0010 No alias no hits & (original description: no original description) 0.07 Orthogroups_2024-Update
Mp7g09350.1 No alias transcription factor (ERF) 0.02 Orthogroups_2024-Update
PSME_00005183-RA No alias (at5g47220 : 92.8) Encodes a member of the ERF (ethylene... 0.06 Orthogroups_2024-Update
PSME_00022946-RA No alias (at5g61890 : 105.0) encodes a member of the ERF... 0.02 Orthogroups_2024-Update
PSME_00033961-RA No alias (at5g21960 : 122.0) encodes a member of the DREB... 0.05 Orthogroups_2024-Update
PSME_00037532-RA No alias (at5g61890 : 129.0) encodes a member of the ERF... 0.06 Orthogroups_2024-Update
PSME_00039617-RA No alias (at4g17500 : 120.0) Encodes a member of the ERF... 0.06 Orthogroups_2024-Update
PSME_00056972-RA No alias (at4g17490 : 92.0) Encodes a member of the ERF (ethylene... 0.02 Orthogroups_2024-Update
Potri.001G069300 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G154200 No alias ethylene responsive element binding factor 5 0.02 Orthogroups_2024-Update
Potri.002G039100 No alias ethylene response factor 1 0.02 Orthogroups_2024-Update
Potri.003G150800 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Potri.006G104200 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G043400 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G091300 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.008G120100 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.009G101900 No alias redox responsive transcription factor 1 0.02 Orthogroups_2024-Update
Potri.015G023200 No alias cytokinin response factor 4 0.03 Orthogroups_2024-Update
Potri.016G018600 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.017G013700 No alias erf domain protein 9 0.02 Orthogroups_2024-Update
Potri.017G087800 No alias related to AP2 11 0.02 Orthogroups_2024-Update
Potri.019G036100 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.019G073300 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s112_23V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s160_12V6 No alias ap2 domain transcription factor 0.02 Orthogroups_2024-Update
Pp1s221_67V6 No alias ap2 erebp transcription factor 0.02 Orthogroups_2024-Update
Pp1s25_13V6 No alias ap2 erf domain-containing transcription factor 0.02 Orthogroups_2024-Update
Pp1s296_32V6 No alias transcriptional factor 0.02 Orthogroups_2024-Update
Pp1s30_284V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s340_16V6 No alias ethylene-responsive transcription 0.03 Orthogroups_2024-Update
Pp1s67_144V6 No alias ap2 domain transcription factor 0.02 Orthogroups_2024-Update
Seita.1G188000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G156200.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Seita.2G269600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.3G139200.1 No alias subgroup ERF-I transcription factor 0.05 Orthogroups_2024-Update
Seita.4G092200.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Seita.5G348000.1 No alias subgroup ERF-VIII transcription factor 0.04 Orthogroups_2024-Update
Seita.6G023800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G098100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.9G320700.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Seita.9G500100.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G473900.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G115400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G139400.1 No alias subgroup ERF-IX transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G212000.1 No alias subgroup ERF-VII transcription factor & transcription... 0.02 Orthogroups_2024-Update
Sobic.005G103100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G167800.3 No alias subgroup ERF-IX transcription factor 0.05 Orthogroups_2024-Update
Sobic.006G210300.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Sobic.006G259000.1 No alias subgroup ERF-VIII transcription factor 0.02 Orthogroups_2024-Update
Sobic.007G077100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G077200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.009G170800.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.05 Orthogroups_2024-Update
Sobic.009G184400.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Solyc02g077370 No alias Ethylene Response Factor C.5 0.02 Orthogroups_2024-Update
Solyc03g006320 No alias Ethylene-responsive transcription factor, putative (AHRD... 0.04 Orthogroups_2024-Update
Solyc07g053740 No alias Ethylene Response Factor F.4 0.02 Orthogroups_2024-Update
Solyc10g009110 No alias ethylene response factor F.5 0.03 Orthogroups_2024-Update
Solyc10g076380 No alias Dehydration responsive element binding transcription... 0.03 Orthogroups_2024-Update
Solyc12g044390 No alias ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.02 Orthogroups_2024-Update
Sopen01g036330 No alias hypothetical protein 0.02 Orthogroups_2024-Update
Sopen03g041270 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen05g029570 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen06g018310 No alias AP2 domain 0.06 Orthogroups_2024-Update
Sopen08g026680 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen12g022660 No alias AP2 domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0004888 transmembrane signaling receptor activity IEP Predicted GO
MF GO:0004970 ionotropic glutamate receptor activity IEP Predicted GO
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005230 extracellular ligand-gated ion channel activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
MF GO:0008066 glutamate receptor activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0022824 transmitter-gated ion channel activity IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0022835 transmitter-gated channel activity IEP Predicted GO
MF GO:0022836 gated channel activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
MF GO:0022839 ion gated channel activity IEP Predicted GO
MF GO:0030594 neurotransmitter receptor activity IEP Predicted GO
MF GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity IEP Predicted GO
MF GO:0038023 signaling receptor activity IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
MF GO:0060089 molecular transducer activity IEP Predicted GO
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 25 73
No external refs found!