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  5. PSME_00004892-RA

PSME_00004892-RA


Description : (at1g19210 : 123.0) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.; Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, LP.02 two leaves visible, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT1G74930.1); Has 5600 Blast hits to 5488 proteins in 238 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 5592; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink). & (q6k7e6|erf1_orysa : 84.7) Ethylene-responsive transcription factor 1 (Ethylene-responsive element-binding factor 1) (EREBP-1) (OsEREBP1) - Oryza sativa (Rice) & (reliability: 246.0) & (original description: no original description)


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004892-RA
Cluster HCCA clusters: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
68470 No alias ethylene responsive element binding factor 1 0.01 Orthogroups_2024-Update
73155 No alias DREB and EAR motif protein 3 0.01 Orthogroups_2024-Update
80895 No alias ethylene responsive element binding factor 2 0.01 Orthogroups_2024-Update
A4A49_24642 No alias ethylene-responsive transcription factor rap2-11 0.01 Orthogroups_2024-Update
A4A49_28228 No alias ethylene-responsive transcription factor erf017 0.01 Orthogroups_2024-Update
A4A49_30015 No alias ethylene-responsive transcription factor erf019 0.01 Orthogroups_2024-Update
A4A49_35180 No alias ethylene-responsive transcription factor 1b 0.01 Orthogroups_2024-Update
A4A49_42088 No alias ethylene-responsive transcription factor 13 0.01 Orthogroups_2024-Update
A4A49_42290 No alias ethylene-responsive transcription factor rap2-4 0.01 Orthogroups_2024-Update
Brara.B00253.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Brara.F03559.1 No alias subgroup ERF-IX transcription factor 0.01 Orthogroups_2024-Update
Brara.G03500.1 No alias subgroup ERF-III transcription factor 0.02 Orthogroups_2024-Update
Brara.G03526.1 No alias Unknown function 0.03 Orthogroups_2024-Update
GRMZM2G080516 No alias ethylene responsive element binding factor 1 0.08 Orthogroups_2024-Update
GRMZM2G124011 No alias dehydration response element B1A 0.01 Orthogroups_2024-Update
GRMZM2G137341 No alias C-repeat/DRE binding factor 2 0.02 Orthogroups_2024-Update
GRMZM2G138396 No alias redox responsive transcription factor 1 0.02 Orthogroups_2024-Update
GRMZM2G380377 No alias dehydration response element B1A 0.02 Orthogroups_2024-Update
GRMZM2G438202 No alias ethylene responsive element binding factor 4 0.05 Orthogroups_2024-Update
GRMZM2G481668 No alias Integrase-type DNA-binding superfamily protein 0.04 Orthogroups_2024-Update
Glyma.05G157400 No alias related to AP2 11 0.01 Orthogroups_2024-Update
Glyma.06G148400 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Glyma.07G212400 No alias redox responsive transcription factor 1 0.03 Orthogroups_2024-Update
Glyma.15G152000 No alias ethylene-responsive element binding protein 0.04 Orthogroups_2024-Update
Glyma.20G203500 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G058940.3 No alias transcription factor component *(HRE/RAP2.12) of... 0.01 Orthogroups_2024-Update
HORVU1Hr1G067110.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G080420.1 No alias Unknown function 0.01 Orthogroups_2024-Update
LOC_Os04g52090 No alias AP2 domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os05g28350 No alias AP2 domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os05g41780 No alias AP2 domain containing protein, expressed 0.01 Orthogroups_2024-Update
MA_10209922g0010 No alias (at1g19210 : 116.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_10431882g0010 No alias (at1g19210 : 119.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
MA_116185g0010 No alias (at5g61600 : 90.9) encodes a member of the ERF (ethylene... 0.02 Orthogroups_2024-Update
MA_4032g0010 No alias (q9sxs8|erf3_tobac : 85.1) Ethylene-responsive... 0.03 Orthogroups_2024-Update
MA_7202656g0010 No alias (at1g74930 : 83.6) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
MA_9304g0020 No alias (at1g28360 : 87.4) encodes a member of the ERF (ethylene... 0.04 Orthogroups_2024-Update
MA_9785986g0010 No alias (at5g21960 : 130.0) encodes a member of the DREB... 0.03 Orthogroups_2024-Update
PSME_00004812-RA No alias (at4g23750 : 92.4) encodes a member of the ERF (ethylene... 0.02 Orthogroups_2024-Update
PSME_00005186-RA No alias (at4g17500 : 141.0) Encodes a member of the ERF... 0.02 Orthogroups_2024-Update
PSME_00008891-RA No alias (at4g17500 : 93.6) Encodes a member of the ERF (ethylene... 0.03 Orthogroups_2024-Update
PSME_00009547-RA No alias (at4g17500 : 103.0) Encodes a member of the ERF... 0.01 Orthogroups_2024-Update
PSME_00037661-RA No alias (at4g17500 : 149.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00040934-RA No alias (at5g64750 : 100.0) Encodes a putative transcription... 0.03 Orthogroups_2024-Update
PSME_00048384-RA No alias (at5g11190 : 113.0) encodes a member of the ERF... 0.01 Orthogroups_2024-Update
PSME_00050134-RA No alias (at5g19790 : 92.0) encodes a member of the ERF (ethylene... 0.02 Orthogroups_2024-Update
PSME_00050761-RA No alias (at1g15360 : 129.0) Encodes a member of the ERF... 0.02 Orthogroups_2024-Update
PSME_00051455-RA No alias (at5g21960 : 102.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00052064-RA No alias (at5g21960 : 132.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00056324-RA No alias (at5g11590 : 111.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
PSME_00056380-RA No alias (at4g17500 : 89.7) Encodes a member of the ERF (ethylene... 0.01 Orthogroups_2024-Update
PSME_00057235-RA No alias (at5g11590 : 122.0) encodes a member of the DREB... 0.04 Orthogroups_2024-Update
PSME_00057236-RA No alias (at5g11590 : 147.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
Potri.019G067400 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Potri.T050600 No alias ethylene response factor 1 0.01 Orthogroups_2024-Update
Seita.1G044700.1 No alias cutin and suberin biosynthesis transcription factor... 0.12 Orthogroups_2024-Update
Seita.2G138400.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Seita.3G291500.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.9G500100.1 No alias subgroup ERF-IX transcription factor 0.02 Orthogroups_2024-Update
Sobic.001G473900.1 No alias subgroup ERF-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.002G225700.1 No alias subgroup ERF-X transcription factor 0.01 Orthogroups_2024-Update
Sobic.006G210300.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Sobic.006G259000.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Sobic.007G077001.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G077100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G077300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G184400.1 No alias subgroup ERF-VIII transcription factor 0.03 Orthogroups_2024-Update
Solyc01g090560 No alias Ethylene-responsive transcription factor (AHRD V3.3 *-*... 0.02 Orthogroups_2024-Update
Solyc04g051360 No alias Ethylene Response Factor D.1 0.02 Orthogroups_2024-Update
Solyc09g089930 No alias ethylene responsive factor E.2 0.01 Orthogroups_2024-Update
Solyc10g006130 No alias EAR motif SlERF36 0.06 Orthogroups_2024-Update
Solyc11g011740 No alias Ethylene-responsive transcription factor (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Solyc12g056980 No alias Ethylene-responsive element binding-factor (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen02g037700 No alias AP2 domain 0.01 Orthogroups_2024-Update
Sopen03g002330 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen04g024720 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen04g027740 No alias AP2 domain 0.02 Orthogroups_2024-Update
Sopen05g030600 No alias AP2 domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA InterProScan predictions
BP GO:0006355 regulation of transcription, DNA-templated IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 20 68
No external refs found!