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  5. PSME_00004919-RA

PSME_00004919-RA


Description : (at2g25140 : 1357.0) Encodes ClpB4, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Targeted to the mitochondrion, also referred to as ClpB-m. Transcripts of ClpB4 accumulate dramatically at high temperatures, suggesting that it may be involved in response to heat stress.; casein lytic proteinase B4 (CLPB4); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: response to heat; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Clp ATPase, C-terminal (InterPro:IPR019489), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-2 (InterPro:IPR013093), ATPase, AAA-type, core (InterPro:IPR003959), Chaperonin clpA/B (InterPro:IPR001270), Chaperonin ClpB (InterPro:IPR017730), Chaperonin ClpA/B, conserved site (InterPro:IPR018368), Clp, N-terminal (InterPro:IPR004176); BEST Arabidopsis thaliana protein match is: casein lytic proteinase B3 (TAIR:AT5G15450.1); Has 30488 Blast hits to 27328 proteins in 3166 species: Archae - 421; Bacteria - 19864; Metazoa - 870; Fungi - 613; Plants - 740; Viruses - 7; Other Eukaryotes - 7973 (source: NCBI BLink). & (q6f2y7|hs101_orysa : 823.0) Heat shock protein 101 - Oryza sativa (Rice) & (reliability: 2714.0) & (original description: no original description)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Pseudotsuga release: PSME_00004919-RA
Cluster HCCA clusters: Cluster_179

Target Alias Description ECC score Gene Family Method Actions
Bradi2g49660 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
Bradi3g44335 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
Bradi3g44341 No alias CLPC homologue 1 0.03 Orthogroups_2024-Update
Brara.G03189.1 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
Cre11.g467575 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Cre12.g533351 No alias heat shock protein 101 0.01 Orthogroups_2024-Update
GRMZM2G360681 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
Glyma.04G062200 No alias casein lytic proteinase B4 0.04 Orthogroups_2024-Update
Glyma.06G202200 No alias heat shock protein 101 0.05 Orthogroups_2024-Update
HORVU1Hr1G076190.4 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
HORVU3Hr1G071120.7 No alias cytosolic chaperone *(Hsp101) 0.03 Orthogroups_2024-Update
HORVU4Hr1G090440.2 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
HORVU6Hr1G028690.3 No alias organellar chaperone *(Clp-p/Clp-m) 0.07 Orthogroups_2024-Update
LOC_Os02g08490 No alias chaperone protein clpB 1, putative, expressed 0.02 Orthogroups_2024-Update
MA_21130g0010 No alias (q6f2y7|hs101_orysa : 1152.0) Heat shock protein 101 -... 0.03 Orthogroups_2024-Update
Mp1g16450.1 No alias cytosolic chaperone (Hsp101) 0.04 Orthogroups_2024-Update
PSME_00000476-RA No alias (q6f2y7|hs101_orysa : 1375.0) Heat shock protein 101 -... 0.04 Orthogroups_2024-Update
PSME_00000477-RA No alias (q6f2y7|hs101_orysa : 1387.0) Heat shock protein 101 -... 0.05 Orthogroups_2024-Update
PSME_00005341-RA No alias (q6f2y7|hs101_orysa : 1383.0) Heat shock protein 101 -... 0.05 Orthogroups_2024-Update
Potri.015G056900 No alias heat shock protein 101 0.03 Orthogroups_2024-Update
Pp1s252_87V6 No alias atpase aaa-2 domain protein 0.02 Orthogroups_2024-Update
Seita.3G091800.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.02 Orthogroups_2024-Update
Solyc03g115230 No alias Solanum lycopersicum heat shock protein 0.03 Orthogroups_2024-Update
Sopen06g006060 No alias AAA domain (Cdc48 subfamily) 0.02 Orthogroups_2024-Update
evm.model.contig_3516.2 No alias (at1g74310 : 794.0) Encodes ClpB1, which belongs to the... 0.06 Orthogroups_2024-Update
evm.model.tig00000655.28 No alias (at5g50920 : 1134.0) Encodes a protein that is similar... 0.02 Orthogroups_2024-Update
evm.model.tig00001416.4 No alias (at5g15450 : 811.0) Encodes a chloroplast-targeted... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0003678 DNA helicase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
MF GO:0008047 enzyme activator activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009411 response to UV IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0042592 homeostatic process IEP Predicted GO
MF GO:0042802 identical protein binding IEP Predicted GO
MF GO:0042803 protein homodimerization activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0045454 cell redox homeostasis IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
BP GO:0065008 regulation of biological quality IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 699 868
IPR004176 Clp_N 196 244
IPR004176 Clp_N 118 167
IPR019489 Clp_ATPase_C 875 954
IPR003959 ATPase_AAA_core 303 433
No external refs found!